View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20688_low_36 (Length: 218)
Name: NF20688_low_36
Description: NF20688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20688_low_36 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 2 - 203
Target Start/End: Complemental strand, 37972752 - 37972551
Alignment:
| Q |
2 |
aaatttacgtataaccaaataaaagtggacatgcaaatcttgttgataagatagctattatgttaatatttttctctttcgttagtgtccttttattcat |
101 |
Q |
| |
|
||||||||| ||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37972752 |
aaatttacgcataaccaaacaaaagtgaacatgcaaatgttgttgataagatagctattatgttaatatttttctctttcgttagtgtccttttattcat |
37972653 |
T |
|
| Q |
102 |
ttaattcagcttttttaactcttaattaaaaccagttaactatccaacactcttacctcataagtcatactcttttccattttttacatttcttcaatag |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37972652 |
ttaattcagcttttttaactcttaattaaaaccagttaactatccaacactcttacctcataagtcatactcttttccattttttacatttcttcaatag |
37972553 |
T |
|
| Q |
202 |
tg |
203 |
Q |
| |
|
|| |
|
|
| T |
37972552 |
tg |
37972551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 37972868 - 37972790
Alignment:
| Q |
2 |
aaatttacgtataaccaaataaaagtggacatgcaaatcttgttgataagatagctattatgttaatatttttctctttcgt |
83 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37972868 |
aaatttacgcataaccaaacaaaagtggacatgcaaat---gttgataagatagctattatgttaatatttttctctttcgt |
37972790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 37972983 - 37972906
Alignment:
| Q |
3 |
aatttacgtataaccaaataaaagtggacatgcaaatcttgttgataagatagctattatgttaatatttttctctttcgt |
83 |
Q |
| |
|
||||||| ||||||| | |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37972983 |
aatttacacataaccatacaaaagtggacatgcaaat---gttgataagatggctattatgttaatatttttctctttcgt |
37972906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University