View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20688_low_4 (Length: 651)

Name: NF20688_low_4
Description: NF20688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20688_low_4
NF20688_low_4
[»] chr7 (9 HSPs)
chr7 (10-309)||(14756667-14756966)
chr7 (339-636)||(14756340-14756637)
chr7 (10-283)||(14709180-14709466)
chr7 (70-244)||(14749528-14749702)
chr7 (339-501)||(14709505-14709668)
chr7 (70-244)||(14764577-14764751)
chr7 (386-486)||(14721685-14721786)
chr7 (498-575)||(14710317-14710394)
chr7 (15-68)||(14749717-14749770)
[»] chr5 (9 HSPs)
chr5 (10-283)||(17571583-17571869)
chr5 (358-575)||(17581654-17581871)
chr5 (339-501)||(17571908-17572070)
chr5 (70-244)||(17563848-17564022)
chr5 (386-486)||(17602405-17602506)
chr5 (498-575)||(17572720-17572797)
chr5 (576-636)||(17580226-17580286)
chr5 (508-575)||(17619915-17619982)
chr5 (151-244)||(17621590-17621682)
[»] chr1 (2 HSPs)
chr1 (73-244)||(15195023-15195194)
chr1 (73-244)||(15215441-15215612)
[»] chr8 (1 HSPs)
chr8 (70-244)||(24394997-24395171)
[»] chr6 (2 HSPs)
chr6 (508-574)||(12613434-12613500)
chr6 (402-498)||(12614179-12614275)


Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 10 - 309
Target Start/End: Complemental strand, 14756966 - 14756667
Alignment:
Q  10 atatgaatacgagaaaattataaacttgaaatttagaaataacaatttgttccaaaatgctttgaatttttcattaacttgaacccttgtactccagagt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14756966 atatgaatacgagaaaattataaacttgaaatttagaaataacaatttgttccaaaatgctttgaatttttcattaacttgaacccttgtactccagagt 14756867  T
Q  110 acatttcactatttgtagacgataagcttagaaagtaactaaagggagttagcgaggatgatctagagattactcttgaaaaggtgatgagactattccg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14756866 acatttcactatttgtagacgataagcttagaaagtaactaaagggagttagcgaggatgatctagagattactcttgaaaaggtgatgagactattccg 14756767  T
Q  210 atacctgcaagaaaaagacatgtttgagatgtattccgatcctagattaccaagatccttctttcactttacttactggaactggagaggtaataatacc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14756766 atacctgcaagaaaaagacatgtttgagatgtattccgatcctagattaccaagatccttctttcactttacttactggaactggagaggtaataatacc 14756667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 339 - 636
Target Start/End: Complemental strand, 14756637 - 14756340
Alignment:
Q  339 tatctgttttcaaaatgaatgaagacagtacaacataacatcattaagtttacatggtttttagacatcaaataccgaatcgaataaacttgaagtcatt 438  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14756637 tatctgttttgaaaatgaatgaagacagtacaacataacatcattaagtttacatggtttttagacatcaaataccgaatcgaataaacttgaagtcatt 14756538  T
Q  439 tcattttgcaacaagtcaactccttgattgtaaacaaaaacacaccctccagagttccaagatgttgtaaacttgttctagctgccaaaacttacataga 538  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14756537 tcattttgcaacaagtcaactccttgattgtaaacaaaaacacaccctccagagttccaagatgttgtaaacttgttctagctgccaaaacttacataga 14756438  T
Q  539 gaacagaattctatttcttggatttaagccatttaagtagtactaccttttttcctcttcttttgattctatcatggagaaaatcagacgaacaatat 636  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14756437 gaacagaattctatttcttggatttaagccatttaagtagtactaccttttttcctcttcttttgattctatcatggagaaaatcagacgaacaatat 14756340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 10 - 283
Target Start/End: Original strand, 14709180 - 14709466
Alignment:
Q  10 atatgaatacgagaaaattataaacttgaaatttagaaataacaatttgttccaaaatgctttgaat-------------ttttcattaacttgaaccct 96  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||             ||||||||||||| ||||||    
T  14709180 atatgaatacgagaaaattataaacttggaatttagaaataacaatttgttccaaaatgctttgaattcctcgttcgaatttttcattaacttaaaccct 14709279  T
Q  97 tgtactccagagtacatttcactatttgtagacgataagcttagaaagtaactaaagggagttagcgaggatgatctagagattactcttgaaaaggtga 196  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14709280 tgttctccagagtacatttcactatttgtagacgataagcttagaaaggaactaaagggagttagcgaagatgatctagagattactcttgaaaaggtga 14709379  T
Q  197 tgagactattccgatacctgcaagaaaaagacatgtttgagatgtattccgatcctagattaccaagatccttctttcactttactt 283  Q
     ||  |||||||||||| |||||||||||||||||||||||| | ||||| |||||||||||| |||||||||||||||||||||||    
T  14709380 cgacgctattccgatacttgcaagaaaaagacatgtttgagaagaattccaatcctagattactaagatccttctttcactttactt 14709466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 70 - 244
Target Start/End: Complemental strand, 14749702 - 14749528
Alignment:
Q  70 tttgaatttttcattaacttgaacccttgtactccagagtacatttcactatttgtagacgataagcttagaaagtaactaaagggagttagcgaggatg 169  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||    
T  14749702 tttgaatttttcattaacttgaacccttgttctccagagtacatttcactatttgtagacgataagcttagaaagggtctaaatggagttagcgaggatg 14749603  T
Q  170 atctagagattactcttgaaaaggtgatgagactattccgatacctgcaagaaaaagacatgtttgagatgtatt 244  Q
    || ||||| |||||||||||||||||||||   |||||||||||||||||||||||||| ||||||||| |||||    
T  14749602 atttagaggttactcttgaaaaggtgatgatgttattccgatacctgcaagaaaaagacgtgtttgagaagtatt 14749528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 339 - 501
Target Start/End: Original strand, 14709505 - 14709668
Alignment:
Q  339 tatctgttttcaaaatgaatgaagacagtacaacataacatcattaagtttacatggtttttagacatcaaataccgaatcgaataaactt-gaagtcat 437  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  14709505 tatcttttttcaaaatgaatgaagaaagtacaacataacatcattaagtttacatggtttttagacatcaaatcccgaatcaaataaacttggaagtcat 14709604  T
Q  438 ttcattttgcaacaagtcaactccttgattgtaaacaaaaacacaccctccagagttccaagat 501  Q
    |||||||||||||||||||||||||||| ||||||| ||||| ||||||||| ||||| |||||    
T  14709605 ttcattttgcaacaagtcaactccttgagtgtaaaccaaaacccaccctccaaagttcgaagat 14709668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 70 - 244
Target Start/End: Complemental strand, 14764751 - 14764577
Alignment:
Q  70 tttgaatttttcattaacttgaacccttgtactccagagtacatttcactatttgtagacgataagcttagaaagtaactaaagggagttagcgaggatg 169  Q
    |||||||||||||| |||||||| ||| ||| |||||||||||||||||| |||||||||||||||||| ||||    |||||||||||||| |||||||    
T  14764751 tttgaatttttcatgaacttgaatcctcgtattccagagtacatttcactctttgtagacgataagcttcgaaaaggtctaaagggagttagtgaggatg 14764652  T
Q  170 atctagagattactcttgaaaaggtgatgagactattccgatacctgcaagaaaaagacatgtttgagatgtatt 244  Q
     | |||| ||||  ||||| ||||| |||   |||||||| ||  |||| ||||||||  ||||||||| |||||    
T  14764651 ttgtagaaattaaccttgacaaggttatggttctattccggtatttgcaggaaaaagatgtgtttgagaagtatt 14764577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 386 - 486
Target Start/End: Original strand, 14721685 - 14721786
Alignment:
Q  386 gtttacatggtttttagacatcaaataccgaatcgaataaacttgaagtc-atttcattttgcaacaagtcaactccttgattgtaaacaaaaacacacc 484  Q
    ||||||||||||||||||||||| || || |||||||||||| ||||||| |||||| |||||||||||| |||||||||||||||| |||||| |||||    
T  14721685 gtttacatggtttttagacatcagatcccaaatcgaataaacctgaagtcaatttcaatttgcaacaagttaactccttgattgtaagcaaaaatacacc 14721784  T
Q  485 ct 486  Q
    ||    
T  14721785 ct 14721786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 498 - 575
Target Start/End: Original strand, 14710317 - 14710394
Alignment:
Q  498 agatgttgtaaacttgttctagctgccaaaacttacatagagaacagaattctatttcttggatttaagccatttaag 575  Q
    ||||||||  ||||||||  ||||||||||||||| ||||||||||||||||| |||||| || ||||||||||||||    
T  14710317 agatgttgggaacttgtttaagctgccaaaacttagatagagaacagaattctctttcttagagttaagccatttaag 14710394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 14749770 - 14749717
Alignment:
Q  15 aatacgagaaaattataaacttgaaatttagaaataacaatttgttccaaaatg 68  Q
    ||||||| || |||||||||||| ||||||| || |||||| ||||||||||||    
T  14749770 aatacgacaagattataaacttggaatttagtaacaacaatatgttccaaaatg 14749717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 283
Target Start/End: Original strand, 17571583 - 17571869
Alignment:
Q  10 atatgaatacgagaaaattataaacttgaaatttagaaataacaatttgttccaaaatgctttgaat-------------ttttcattaacttgaaccct 96  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||             ||||||||||||||||||||    
T  17571583 atatgaatacgagaaaattataaacttggaatttagaaataacaatttcttccaaaatgctttgaattcctcgttcgaatttttcattaacttgaaccct 17571682  T
Q  97 tgtactccagagtacatttcactatttgtagacgataagcttagaaagtaactaaagggagttagcgaggatgatctagagattactcttgaaaaggtga 196  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  17571683 tgttctccagagtacatttcactatttgtagacgataagcttagaaaggaactaaagggagttagcgaggatgatgtagagattactcttgaaaatgtga 17571782  T
Q  197 tgagactattccgatacctgcaagaaaaagacatgtttgagatgtattccgatcctagattaccaagatccttctttcactttactt 283  Q
     ||  |||||||||||| |||||||||||||||||||||||| | ||||| |||||||||||| |||||||||||||||||||||||    
T  17571783 cgacgctattccgatacttgcaagaaaaagacatgtttgagaagaattccaatcctagattactaagatccttctttcactttactt 17571869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 358 - 575
Target Start/End: Original strand, 17581654 - 17581871
Alignment:
Q  358 tgaagacagtacaacataacatcattaagtttacatggtttttagacatcaaataccgaatcgaataaacttgaagtcatttcattttgcaacaagtcaa 457  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||    
T  17581654 tgaagacaatacaacataacatcattaaatttacatggtttttagacatcaaaacccgaatcgaataaacttgaagtcatttcattttgcaacaactcaa 17581753  T
Q  458 ctccttgattgtaaacaaaaacacaccctccagagttccaagatgttgtaaacttgttctagctgccaaaacttacatagagaacagaattctatttctt 557  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||  |||||||||||||||||||||||||| |||||||||||||    
T  17581754 ctccttgagtgtaaacaaaaacacaccctccaaagttccaagatgttggaaacttgtttaagctgccaaaacttacatagagaacaaaattctatttctt 17581853  T
Q  558 ggatttaagccatttaag 575  Q
    ||||||||||||||||||    
T  17581854 ggatttaagccatttaag 17581871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 339 - 501
Target Start/End: Original strand, 17571908 - 17572070
Alignment:
Q  339 tatctgttttcaaaatgaatgaagacagtacaacataacatcattaagtttacatggtttttagacatcaaataccgaatcgaataaacttgaagtcatt 438  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  17571908 tatcttttttcaaaatgaatgaagaaagtacaacataacatcattaagtttacatggtttttagatatcaaatcccgaatcgaataaacttgaagtcatt 17572007  T
Q  439 tcattttgcaacaagtcaactccttgattgtaaacaaaaacacaccctccagagttccaagat 501  Q
    ||||||||||||||||| ||||||||| ||||||| ||||| ||||||||| |||||||||||    
T  17572008 tcattttgcaacaagtcgactccttgagtgtaaaccaaaacccaccctccaaagttccaagat 17572070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 70 - 244
Target Start/End: Original strand, 17563848 - 17564022
Alignment:
Q  70 tttgaatttttcattaacttgaacccttgtactccagagtacatttcactatttgtagacgataagcttagaaagtaactaaagggagttagcgaggatg 169  Q
    |||||||||||||| |||||||| ||| ||| |||||||||||||||||| |||||||||||||||||| ||||    |||||||||||||| |||||||    
T  17563848 tttgaatttttcatgaacttgaatcctcgtattccagagtacatttcactctttgtagacgataagcttcgaaaaggtctaaagggagttagtgaggatg 17563947  T
Q  170 atctagagattactcttgaaaaggtgatgagactattccgatacctgcaagaaaaagacatgtttgagatgtatt 244  Q
     | |||||||||  ||||| ||||| |||   |||||||| ||  |||| ||||||||  ||||||||| |||||    
T  17563948 ttgtagagattatccttgacaaggttatggttctattccggtatttgcaggaaaaagatgtgtttgagaagtatt 17564022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 386 - 486
Target Start/End: Complemental strand, 17602506 - 17602405
Alignment:
Q  386 gtttacatggtttttagacatcaaataccgaatcgaataaacttgaagtc-atttcattttgcaacaagtcaactccttgattgtaaacaaaaacacacc 484  Q
    |||||||||||||||||||||||||| || |||||||||||| ||||||| |||||| |||||||||||| |||||||||||||||| |||||| |||||    
T  17602506 gtttacatggtttttagacatcaaatcccaaatcgaataaacctgaagtcaatttcaatttgcaacaagttaactccttgattgtaagcaaaaatacacc 17602407  T
Q  485 ct 486  Q
    ||    
T  17602406 ct 17602405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 498 - 575
Target Start/End: Original strand, 17572720 - 17572797
Alignment:
Q  498 agatgttgtaaacttgttctagctgccaaaacttacatagagaacagaattctatttcttggatttaagccatttaag 575  Q
    ||||||||  ||||||||  ||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||    
T  17572720 agatgttgggaacttgtttaagctgccaaaacttacatagagaacagaattctctttcttggagtttagccatttaag 17572797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 576 - 636
Target Start/End: Original strand, 17580226 - 17580286
Alignment:
Q  576 tagtactaccttttttcctcttcttttgattctatcatggagaaaatcagacgaacaatat 636  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||  ||||||||||    
T  17580226 tagtactacctttttttctcttcttttgattatatcatggagaaaatcaaccgaacaatat 17580286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 508 - 575
Target Start/End: Complemental strand, 17619982 - 17619915
Alignment:
Q  508 aacttgttctagctgccaaaacttacatagagaacagaattctatttcttggatttaagccatttaag 575  Q
    ||||||||  ||||||||||||||||||||| ||||||||||| ||||||||| |  |||||||||||    
T  17619982 aacttgtttaagctgccaaaacttacatagataacagaattctctttcttggagtgcagccatttaag 17619915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 151 - 244
Target Start/End: Complemental strand, 17621682 - 17621590
Alignment:
Q  151 aagggagttagcgaggatgatctagagattactcttgaaaaggtgatgagactattccgatacctgcaagaaaaagacatgtttgagatgtatt 244  Q
    ||||| ||| ||||||||||| | | |||||||||||| ||||||||||  ||||||| |||| |||||| ||||||| ||||||||| |||||    
T  17621682 aagggggtttgcgaggatgatttggtgattactcttgacaaggtgatgatgctattccaatacttgcaag-aaaagacttgtttgagaagtatt 17621590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 73 - 244
Target Start/End: Complemental strand, 15195194 - 15195023
Alignment:
Q  73 gaatttttcattaacttgaacccttgtactccagagtacatttcactatttgtagacgataagcttagaaagtaactaaagggagttagcgaggatgatc 172  Q
    |||||| ||||||||||||| ||| || ||||||||||||||||||||||| || |||||||||||  |||    ||||||||| |||| ||||||| |     
T  15195194 gaatttatcattaacttgaatcctcgttctccagagtacatttcactatttttaaacgataagcttcaaaatggtctaaagggaattagtgaggatgttg 15195095  T
Q  173 tagagattactcttgaaaaggtgatgagactattccgatacctgcaagaaaaagacatgtttgagatgtatt 244  Q
    |||||||||||||| | ||||| |||    ||||||| ||  |||| ||||||||  ||||||||| |||||    
T  15195094 tagagattactcttaacaaggttatgtttttattccgttatttgcaggaaaaagatgtgtttgagaagtatt 15195023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 73 - 244
Target Start/End: Complemental strand, 15215612 - 15215441
Alignment:
Q  73 gaatttttcattaacttgaacccttgtactccagagtacatttcactatttgtagacgataagcttagaaagtaactaaagggagttagcgaggatgatc 172  Q
    |||||| ||||||||||||| ||| || ||||||||||||||||||||||| || |||||||||||  |||    ||||||||| |||| ||||||| |     
T  15215612 gaatttatcattaacttgaatcctcgttctccagagtacatttcactatttttaaacgataagcttcaaaatggtctaaagggaattagtgaggatgttg 15215513  T
Q  173 tagagattactcttgaaaaggtgatgagactattccgatacctgcaagaaaaagacatgtttgagatgtatt 244  Q
    |||||||||||||| | ||||| |||    ||||||| ||  |||| ||||||||  ||||||||| |||||    
T  15215512 tagagattactcttaacaaggttatgtttttattccgttatttgcaggaaaaagatgtgtttgagaagtatt 15215441  T

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Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 70 - 244
Target Start/End: Complemental strand, 24395171 - 24394997
Alignment:
Q  70 tttgaatttttcattaacttgaacccttgtactccagagtacatttcactatttgtagacgataagcttagaaagtaactaaagggagttagcgaggatg 169  Q
    ||||||| ||||||||||||||| ||  || ||||||||| |||||||||||||||||| ||||| ||| | |||   || || || || | |||||| |    
T  24395171 tttgaatatttcattaacttgaatccccgttctccagagttcatttcactatttgtagatgataaacttcgtaagggtctgaaaggggtcaacgaggacg 24395072  T
Q  170 atctagagattactcttgaaaaggtgatgagactattccgatacctgcaagaaaaagacatgtttgagatgtatt 244  Q
    || ||||  ||||||| || ||||||||||  || ||||||||| |||||||||||||  | ||||||| |||||    
T  24395071 atgtagaagttactctggacaaggtgatgatgctgttccgatacttgcaagaaaaagatgtttttgagaagtatt 24394997  T

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Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 508 - 574
Target Start/End: Complemental strand, 12613500 - 12613434
Alignment:
Q  508 aacttgttctagctgccaaaacttacatagagaacagaattctatttcttggatttaagccatttaa 574  Q
    |||||||||  ||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  12613500 aacttgttcatgctaccaaaacttacatagagaacagaattctctttcttggaattaagccatttaa 12613434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 402 - 498
Target Start/End: Complemental strand, 12614275 - 12614179
Alignment:
Q  402 gacatcaaataccgaatcgaataaacttgaagtcatttcattttgcaacaagtcaactccttgattgtaaacaaaaacacaccctccagagttccaa 498  Q
    |||||||||| || |||| |  ||||||||| |||||| ||||||||||||||||||  ||| |||| ||| ||||| |||  ||||| ||||||||    
T  12614275 gacatcaaattccaaatcaagaaaacttgaattcatttgattttgcaacaagtcaacctcttcattgaaaataaaaatacaaactccaaagttccaa 12614179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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