View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20688_low_5 (Length: 575)
Name: NF20688_low_5
Description: NF20688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20688_low_5 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 15 - 565
Target Start/End: Complemental strand, 9392634 - 9392084
Alignment:
| Q |
15 |
aaagctgatgatgaagctatggataattcacccgactctgaggtatttgaggttgaaagactactctctatttgctatggtgatcccaacgaagatgaaa |
114 |
Q |
| |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9392634 |
aaagctgatgatgaagctatggatgattcacctgactctgaggtatttgaggttgaaagactactctctatttgctatggtgatcccaacgaagatgaaa |
9392535 |
T |
|
| Q |
115 |
aaccaggactttattttaaagtaagttttcttgcctcattgtgtaattaattattttcagctagtggtcattattttttatgctataaatttctaatctt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9392534 |
aaccaggactttattttaaagtaagttttcttgccttaatgtgtaattaattattttcagctagtggtcattattttttatgctataaatttctaatctt |
9392435 |
T |
|
| Q |
215 |
tcaggtgcattggaagggttacgattccagttgtgatacgtgggagcccattgatggcttgaggcatgttccaatcatcaagatattgattatcgttcct |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||| |||||||||| ||||||||||||||||| |||||| |
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|
| T |
9392434 |
tcaggtgcattggaagggttacgattccagttatgatacttgggagcccattgagggcttgaggtatgttccaattatcaagatattgattattgttcct |
9392335 |
T |
|
| Q |
315 |
ctaactttgcattacttaagatttgcctgttacttaaggcttatagctaattatatgctagattctaactgtgattattatttaacagcgagtgtaaaga |
414 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9392334 |
ctaactttgcattacttaagatttgcccgttacttaaggcttatagctaattatatgcaagattctaactttgattattatttaacagcgagtgtaaaga |
9392235 |
T |
|
| Q |
415 |
tgctatgaaagattttgttataaatggatgtaaggaaaagatactgcctcttcctgtaagtctcaccactcctcattattaacttgtacacaaccccttc |
514 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
9392234 |
tgctatgaaagattttgttataaatggatataaggaaaagatactgcctcttcctgtaagtctcaccactcctcattattgacttgtactcaaccccttc |
9392135 |
T |
|
| Q |
515 |
tttcacctctaatggtttatcaattctctgttattcattaaaatgatctgt |
565 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
9392134 |
tttcacctctaatggtttatcaattctttgttattcattaaaatgatctgt |
9392084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 16 - 564
Target Start/End: Complemental strand, 1340466 - 1339911
Alignment:
| Q |
16 |
aagctgatgatgaagctatggataattcacccgactctgaggtatttgaggttgaaagactactctctatttgctatggtgatcccaacgaagatgaaaa |
115 |
Q |
| |
|
||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
1340466 |
aagctgatggtgaagctacaaataattcacctgactctgaggtatttgaggttgaaagactactctctatttgctatggcgatcccaacgaagatgaaaa |
1340367 |
T |
|
| Q |
116 |
accaggactttattttaaagtaagttttcttgcctcat----------tgtgtaattaattattttcagctagtggtcattattttttatgctataaatt |
205 |
Q |
| |
|
||||||||| ||||| | |||| |||||||||||| || | || |||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
1340366 |
accaggactatatttcagagtaggttttcttgccttataactttatcttatgcaattaatt--tttcagctagtggtcattattttttatgctataaatt |
1340269 |
T |
|
| Q |
206 |
tctaatctttcaggtgcattggaagggttacgattccagttgtgatacgtgggagcccattgatggcttgaggcatgttccaatcatcaagatattgatt |
305 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||| ||||||||| || ||||||| ||||||||||||||| |
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|
| T |
1340268 |
tataatctttcaggtgcagtggaagggttacgattccagttatgatacatgggagcccattgagggcttgaggtatattccaattatcaagatattgatt |
1340169 |
T |
|
| Q |
306 |
atcgttcctctaactttgcattacttaagatttgcctgttacttaaggcttatagctaattatatgctagattctaactgtgattattatttaacagcga |
405 |
Q |
| |
|
|| ||||||| ||| |||| | ||||||||||||| ||||| || |||||||||| ||||| |||||||||||| ||||||||||||| ||||||||||| |
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|
| T |
1340168 |
attgttcctcaaacattgcttcacttaagatttgc-tgttaatttaggcttatagttaattgtatgctagattccaactgtgattattgtttaacagcga |
1340070 |
T |
|
| Q |
406 |
gtgtaaagatgctatgaaagattttgttataaatggatgtaaggaaaagatactgcctcttcctgtaagtctcaccactcctcattattaacttgtacac |
505 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| | |
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|
| T |
1340069 |
gtgtaaagatgctatgaaagattttgtcataaatggatataaggaaaagatattgcctcttcctgtaagtctcaccactcctcattattgacttgtactc |
1339970 |
T |
|
| Q |
506 |
aaccccttctttcacctctaatggtttatcaattctctgttattcattaaaatgatctg |
564 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
1339969 |
aaccgcttctttcacctctaatggtttatcaactctctgttattcattaaaattatctg |
1339911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 348
Target Start/End: Complemental strand, 31942263 - 31941931
Alignment:
| Q |
16 |
aagctgatgatgaagctatggataattcacccgactctgaggtatttgaggttgaaagactactctctatttgctatggtgatcccaacgaagatgaaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31942263 |
aagctgatgatgaagctatggataattcactcgactctgaggtatttgaggttgaaagactactctctatttgctatggtgatcccaacgaagatggaaa |
31942164 |
T |
|
| Q |
116 |
accaggactttattttaaagtaagttttcttgcctcattgtgtaattaattattttcagctagtggtcattattttttatgctataaatttctaatcttt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31942163 |
accaggactttattttaaagtaagttttcttgccttattgtgtaattaattattttcagctagtggtcattattttttatgctataaatttctaatcttt |
31942064 |
T |
|
| Q |
216 |
caggtgcattggaagggttacgattccagttgtgatacgtgggagcccattgatggcttgaggcatgttccaatcatcaagatattgattatcgttcctc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||| |
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|
| T |
31942063 |
caggtgcattggaagggttacgattccagtaatgatacgtgggagcccattgagggcttgaggtatgttccaatcatcaagatattgattattgttcctc |
31941964 |
T |
|
| Q |
316 |
taactttgcattacttaagatttgcctgttact |
348 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
31941963 |
taactttgcattacttaagatttgcccgttact |
31941931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 379 - 565
Target Start/End: Complemental strand, 31941932 - 31941749
Alignment:
| Q |
379 |
ctaactgtgattattatttaacagcgagtgtaaagatgctatgaaagattttgttataaatggatgtaaggaaaagatactgcctcttcctgtaagtctc |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31941932 |
ctaactgtgattattatttaacagcgagtgtaaagatgctatgaaagattttgttataaatggatataaggaaaagatactgcctcttcctgtaagtctc |
31941833 |
T |
|
| Q |
479 |
accactcctcattattaacttgtacacaaccccttctttcacctctaatggtttatcaattctctgttattcattaaaatgatctgt |
565 |
Q |
| |
|
|||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31941832 |
acca---ctcattatttacttgtactcaaccccttctttcacctctaatggtttatcaattctctgctattcattaaaatgatctgt |
31941749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 13538686 - 13538606
Alignment:
| Q |
198 |
tataaatttctaatctttcaggtgcattggaagggttacgattccagttgtgatacgtgggagcccattgatggcttgagg |
278 |
Q |
| |
|
||||||||| ||||| |||||||||| |||||||||||||||||||||| ||||| |||||||| ||||| ||||||||| |
|
|
| T |
13538686 |
tataaatttataatccttcaggtgcagtggaagggttacgattccagttacgatacatgggagccaattgaaggcttgagg |
13538606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 537
Target Start/End: Complemental strand, 13538475 - 13538335
Alignment:
| Q |
397 |
taacagcgagtgtaaagatgctatgaaagattttgttataaatggatgtaaggaaaagatactgcctcttcctgtaagtctcaccactcctcattattaa |
496 |
Q |
| |
|
|||||| || ||||| ||||| ||| |||||| |||| || |||| ||| || |||||| ||||||||||||| ||||||||||||||| ||||| | |
|
|
| T |
13538475 |
taacagtgactgtaaggatgccttgagagatttagttacaacaggatataaagataagatattgcctcttcctgtgagtctcaccactccttgttattga |
13538376 |
T |
|
| Q |
497 |
cttgtacacaaccccttctttcacctctaatggtttatcaa |
537 |
Q |
| |
|
||| || |||| ||||||| |||| |||| | ||||||| |
|
|
| T |
13538375 |
attgcactcaacttcttcttttacctttaattgcttatcaa |
13538335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 5642514 - 5642391
Alignment:
| Q |
16 |
aagctgatgatgaagctatggataattcacccgactctgaggtatttgaggttgaaagactactctctatttgctatggtgatcccaacgaagatgaaaa |
115 |
Q |
| |
|
|||||||||||||||| ||||||| |||| | |||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||| ||||||||||| |
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|
| T |
5642514 |
aagctgatgatgaagcaatggatagttcatctgactctgaggtatttgaggtagaaagactagtctctgtttgctatggtgatcccaatgaagatgaaaa |
5642415 |
T |
|
| Q |
116 |
accaggactttattttaaagtaag |
139 |
Q |
| |
|
| |||||||||| || |||||||| |
|
|
| T |
5642414 |
agcaggactttacttcaaagtaag |
5642391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 353 - 537
Target Start/End: Complemental strand, 5641998 - 5641819
Alignment:
| Q |
353 |
gcttatagctaattatatgctagattctaactgtgattattatttaacagcgagtgtaaagatgctatgaaagattttgttataaatggatgtaaggaaa |
452 |
Q |
| |
|
|||||||||||| || |||| |||||||||| | ||| |||||||||||||| |||||||| ||||||||||| ||||||| || |||| | |||| | |
|
|
| T |
5641998 |
gcttatagctaaata-atgcaagattctaaccg--atttttatttaacagcgattgtaaagaggctatgaaagaatttgttactaaaggatatgaggata |
5641902 |
T |
|
| Q |
453 |
agatactgcctcttcctgtaagtctcaccactcctcattattaacttgtacacaa-ccccttctttcacctctaatggtttatcaa |
537 |
Q |
| |
|
||||| |||||||||||||||||||| | | ||||||||| |||| || ||| |||||||||| ||||||||| |||| |||| |
|
|
| T |
5641901 |
agatattgcctcttcctgtaagtctcgcaa---ctcattattggcttgcactcaacccccttctttgacctctaattgtttgtcaa |
5641819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 5642163 - 5642062
Alignment:
| Q |
176 |
tagtggtcattattttttatgctataaatttctaatctttcaggtgcattggaagggttacgattccagttgtgatacgtgggagcccattgatggcttg |
275 |
Q |
| |
|
||||||||||||||||| || | ||||||| |||||||||||||||| ||||||||||| || |||||| |||||| |||||||| ||||| |||||| |
|
|
| T |
5642163 |
tagtggtcattattttt-atattctaaatttataatctttcaggtgcagtggaagggttatgacaccagttatgatacatgggagccaattgagggcttg |
5642065 |
T |
|
| Q |
276 |
agg |
278 |
Q |
| |
|
||| |
|
|
| T |
5642064 |
agg |
5642062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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