View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20688_low_7 (Length: 509)
Name: NF20688_low_7
Description: NF20688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20688_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 499
Target Start/End: Original strand, 3874181 - 3874665
Alignment:
| Q |
18 |
cttccaattcactctctgatctgtgatctatgtatagaggagaagccacagctagaactactaagcttatggctgctactctctcataagatgagaattt |
117 |
Q |
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| T |
3874181 |
cttccaactcactctctgatctgtgatctatgtatagaggagaagccacagctagaactactaagcttatggctgctactctctcataagatgaaaattt |
3874280 |
T |
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| Q |
118 |
gtgacccctcctactagcttcaggttccatttcagaagattgatttagatgaaaattgtgttgttaattaaaatgtatgtatatatgatatgatatgatg |
217 |
Q |
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| T |
3874281 |
gtgacccctcctactagcttcaggttccatt-cagaagattgatttagatgaaaattgtgttgttaattaaaatgtatgtatatatgatatgatatgatg |
3874379 |
T |
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| Q |
218 |
gaattgcaacacaaaaatattgatatggtaagtggaatattgcttttcaaagtatgcactaactaaagagcatcggattctc----actactatattctc |
313 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3874380 |
gaattgcaacacaaaaatgttgatatggtaagtggaatattgcttttcaaagtatgcactaactaaagagcatcggattctcactaactactatattctc |
3874479 |
T |
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| Q |
314 |
attcatgtactaatgtgggacccgaataaaaatgaatatcaatgtgcgcaatcnnnnnnnnnnnnnnnnnnnnnnnaaagatagagaacaatcaacaaag |
413 |
Q |
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| T |
3874480 |
attcatgtactaatgtgggacccgaataaaaatgaatatcaatgtgcgcaatcttttttaaccattttcttttttgaaagatagagaacaatcaacaaag |
3874579 |
T |
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| Q |
414 |
aactagaaactccagaactatcagcaaccaacaagtgattaatctaagctggagctagcaagctcgtagaaaatcaagaagaataa |
499 |
Q |
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| T |
3874580 |
aactagaaactccagaaccatcagcaactaacaagtgattaatctaagctggggctagcaagctcgtagaaaatcaagaagaataa |
3874665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 3884709 - 3884859
Alignment:
| Q |
18 |
cttccaattcactctctgatctgtgatctatgtatagaggagaagccacagctagaactactaagcttatggctgctactctctcataagatgagaattt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | || || ||||| |
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| T |
3884709 |
cttccaattcactctctgatctgtgatctatgtatagaggagaagccacagctagaactaccaagcttatggctgctactctctcaaatgaagaaaattt |
3884808 |
T |
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| Q |
118 |
gtgacccctcctactagcttcaggttccatttcagaagattgatttagatga |
169 |
Q |
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| T |
3884809 |
gcttcccctcctattagcttcaagttcca-ttcaaaagattgatttagatga |
3884859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 173 - 300
Target Start/End: Original strand, 3884886 - 3885009
Alignment:
| Q |
173 |
ttgtgttgttaattaaaatgtatgtatatatgatatgatatgatggaattgcaacacaaaaatattgatatggtaagtggaatattgc-ttttcaaagta |
271 |
Q |
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|||||||| |||||||||||||| ||| | | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3884886 |
ttgtgttgctaattaaaatgtatatatgttt-atatgatatgatgaaattgcaacacaaaaatattgatatggtaagtggaatattgctttttcaaagta |
3884984 |
T |
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| Q |
272 |
tgcactaactaaagagcatcggattctca |
300 |
Q |
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| T |
3884985 |
agc----actaaagagcatcggattctca |
3885009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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