View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20689_high_3 (Length: 332)
Name: NF20689_high_3
Description: NF20689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20689_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 29 - 319
Target Start/End: Complemental strand, 45513107 - 45512815
Alignment:
| Q |
29 |
ccctctagtttcgaaactaacattaacctcccgtaaattttaatcaaatagacaatcaccccgtctctattaacagttaatttttccgttaactcttctt |
128 |
Q |
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| T |
45513107 |
ccctctagtttcgaaactaacattaacctcccgtaagttttaatcaaatagacaatcaccccgtctctattaacagttaatttttccgttaactcttctt |
45513008 |
T |
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| Q |
129 |
agagaatcttctgttaacat--tgtggggacaaaccttcattgttgaatctaagtcaatccattaatatcatcaaccaaacatttaagaaaccttacaga |
226 |
Q |
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| T |
45513007 |
aaagaatcttctgttaacatattgtggggacaaaccttcattgttgaatctaagtcaatccattaatatcatcaaccaaacatttaagaaaccttacaga |
45512908 |
T |
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| Q |
227 |
ttagaatagtaatgggtttgtaacattttggcattccctctcaaaactgaaacataggtgtattcctaatttttaaatccttgtcttctaatc |
319 |
Q |
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| T |
45512907 |
ttataatagtaatgggtttgtaacattttggcattccctctcaaaactgaaacataggtgtattcctaatttttaaatccttgtcttctaatc |
45512815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 29 - 319
Target Start/End: Complemental strand, 35744568 - 35744286
Alignment:
| Q |
29 |
ccctctagtttcgaaactaacattaacctcccgtaaattttaatcaaatagacaatcaccccgt-ctctattaaca--gttaatttttccgttaactctt |
125 |
Q |
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||||||| |||| ||||||||||||||||||| | ||||||||||||||| |||| ||||| | ||||||||||| |||||||||||| |||| | || |
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| T |
35744568 |
ccctctaatttcaaaactaacattaacctcccttgaattttaatcaaataaacaaacaccctattctctattaacaccgttaatttttcccttaattttt |
35744469 |
T |
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| Q |
126 |
-cttagagaatcttctgttaacattgtggggacaaaccttcattgttgaatctaagtcaatccattaatatcatcaaccaaacatttaagaaaccttaca |
224 |
Q |
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|||| |||||||||| |||| |||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||| |||| |
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| T |
35744468 |
tcttaaagaatcttctattaaaattgtggggacaaaccttcattgttgaatc-gagtcaatccactaatatcatc------------aagaaaccctaca |
35744382 |
T |
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| Q |
225 |
g-attagaatagtaatgggtttgtaacattttggcattccctctcaaaactgaaacataggtgtattcctaatttttaaatccttgtcttctaatc |
319 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| ||| ||||||||||||| |
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| T |
35744381 |
gcattagaatagtaatgggtttgtaacattttggcattccctctcaaaactgaaacgtaagtgtattcctaactttttaattattgtcttctaatc |
35744286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 26126739 - 26126683
Alignment:
| Q |
241 |
ggtttgtaacattttggcattccctctcaaaactgaaacataggtgtattcctaatt |
297 |
Q |
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|||||||||| ||||||| || |||||||||||||||||||| || |||||| |||| |
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| T |
26126739 |
ggtttgtaaccttttggcgtttcctctcaaaactgaaacataagtatattccaaatt |
26126683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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