View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20689_low_1 (Length: 342)
Name: NF20689_low_1
Description: NF20689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20689_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 45349298 - 45349605
Alignment:
| Q |
1 |
agattataacattgataattgtacttgtagaagctttaagaaggttattgggttttcannnnnnngttcttcgaaaccacactcatgagtaggagctata |
100 |
Q |
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| T |
45349298 |
agattataacattgataattgtacttgtagaagctttaagaaggttatggggttttcatttttttgttcttcgaaaccacactcatgagtaggagctat- |
45349396 |
T |
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| Q |
101 |
tattgatttgaaaatgcaatatcaatagtattaagtgacttgttttgtaagtatgcaatgtgtaattaataatatcccacttgtaaatcgaatgtgaaaa |
200 |
Q |
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| T |
45349397 |
---tgatttgaaaatgcaatatcaatagtattaagtgacttgttttgtatgtttgcaatgtgtaattaata---tcccacttgtaaatcgaatgtgaaaa |
45349490 |
T |
|
| Q |
201 |
tactcacatgaacctaaaaaccaatgacaattttatannnnnnnagaggagcaatgaacattttatgattattgttggtttggtggactgcacctattga |
300 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45349491 |
tactcacatgaacctaaaaagcaatgacaattttatatttttttagaggagcaatgaacattttatgattattgttggtttggtggactgcacctattga |
45349590 |
T |
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| Q |
301 |
aatgctcatctgata |
315 |
Q |
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||||||| ||||||| |
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| T |
45349591 |
aatgctcgtctgata |
45349605 |
T |
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