View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20689_low_2 (Length: 341)

Name: NF20689_low_2
Description: NF20689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20689_low_2
NF20689_low_2
[»] chr8 (8 HSPs)
chr8 (12-323)||(37031582-37031893)
chr8 (22-207)||(8781301-8781472)
chr8 (155-208)||(18836182-18836235)
chr8 (153-204)||(8370668-8370719)
chr8 (74-132)||(14984115-14984173)
chr8 (153-204)||(6431723-6431774)
chr8 (153-204)||(26241864-26241915)
chr8 (153-204)||(26652706-26652757)
[»] chr4 (19 HSPs)
chr4 (44-323)||(5524081-5524365)
chr4 (23-206)||(19374051-19374234)
chr4 (22-205)||(9538663-9538845)
chr4 (44-208)||(19363135-19363297)
chr4 (44-206)||(32637210-32637372)
chr4 (265-323)||(9538887-9538945)
chr4 (267-323)||(21161422-21161478)
chr4 (44-103)||(11421712-11421770)
chr4 (241-323)||(10725223-10725305)
chr4 (241-323)||(10938992-10939074)
chr4 (261-323)||(19374268-19374330)
chr4 (153-205)||(11421821-11421873)
chr4 (153-204)||(4546899-4546950)
chr4 (153-204)||(9488382-9488433)
chr4 (153-204)||(15462337-15462388)
chr4 (153-204)||(34976388-34976439)
chr4 (152-205)||(30039918-30039971)
chr4 (165-202)||(35224516-35224553)
chr4 (151-203)||(5667278-5667330)
[»] chr7 (12 HSPs)
chr7 (45-255)||(25844887-25845097)
chr7 (44-104)||(24442894-24442953)
chr7 (44-104)||(31189889-31189948)
chr7 (111-198)||(19389336-19389423)
chr7 (44-104)||(18257084-18257143)
chr7 (153-204)||(18258539-18258590)
chr7 (22-104)||(15168810-15168892)
chr7 (153-204)||(8465835-8465886)
chr7 (153-204)||(10666479-10666530)
chr7 (153-204)||(41680383-41680434)
chr7 (238-323)||(12393547-12393632)
chr7 (174-206)||(24442789-24442821)
[»] chr6 (9 HSPs)
chr6 (47-215)||(19219251-19219417)
chr6 (45-323)||(10358372-10358628)
chr6 (153-204)||(14075316-14075367)
chr6 (22-104)||(19734762-19734842)
chr6 (22-104)||(19735037-19735117)
chr6 (126-203)||(13194769-13194846)
chr6 (153-204)||(33317701-33317752)
chr6 (22-104)||(21995663-21995743)
chr6 (118-186)||(4074198-4074265)
[»] chr5 (11 HSPs)
chr5 (87-320)||(28719007-28719237)
chr5 (153-205)||(39428275-39428327)
chr5 (153-204)||(31097652-31097703)
chr5 (243-323)||(20084433-20084513)
chr5 (139-202)||(31651202-31651265)
chr5 (153-208)||(39536017-39536072)
chr5 (47-104)||(20099820-20099876)
chr5 (153-193)||(9811159-9811199)
chr5 (153-193)||(12703400-12703440)
chr5 (153-193)||(12764416-12764456)
chr5 (153-201)||(25804803-25804851)
[»] chr3 (5 HSPs)
chr3 (47-208)||(26817022-26817182)
chr3 (44-206)||(14147745-14147907)
chr3 (153-204)||(21399630-21399681)
chr3 (153-204)||(25978142-25978193)
chr3 (165-203)||(23014553-23014591)
[»] chr2 (10 HSPs)
chr2 (22-104)||(29801176-29801257)
chr2 (22-103)||(20686939-20687020)
chr2 (44-104)||(24763189-24763248)
chr2 (44-104)||(15341559-15341618)
chr2 (152-204)||(24228629-24228681)
chr2 (153-204)||(15341458-15341509)
chr2 (153-208)||(19617268-19617323)
chr2 (154-205)||(37444003-37444054)
chr2 (152-205)||(24763087-24763140)
chr2 (44-104)||(19617159-19617218)
[»] chr1 (5 HSPs)
chr1 (115-204)||(35132705-35132794)
chr1 (113-202)||(9916012-9916100)
chr1 (117-196)||(31234170-31234249)
chr1 (153-204)||(28134138-28134189)
chr1 (153-202)||(43801782-43801831)
[»] scaffold0023 (1 HSPs)
scaffold0023 (153-208)||(108536-108591)
[»] scaffold0111 (1 HSPs)
scaffold0111 (153-204)||(27375-27426)
[»] scaffold0001 (1 HSPs)
scaffold0001 (153-204)||(138123-138174)


Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 12 - 323
Target Start/End: Complemental strand, 37031893 - 37031582
Alignment:
Q  12 tatatatggtca--cacaatataacagtcagaatgagaaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagttagtgaac 109  Q
    ||||||||||||  ||||||| |||||||||||| |||||||||||||||||    ||||||||||||||||||||||||||| ||||||||||||||||    
T  37031893 tatatatggtcatacacaatagaacagtcagaattagaaatataagtaagac----aagattgggtgcatttagcaaataacgataattagttagtgaac 37031798  T
Q  110 actaatgggttaatgagcttacataagtccagtagtgattacttgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagtcagat 209  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  37031797 actaatgggttaatgggcttacataagtccagtagtgattacttgacttgcaaaacacacaagttgttctataaatacaactcttgtgctgaagtcagat 37031698  T
Q  210 ga--cacattttgagaaaccctaaaggcaaaaatcaaaccctagttttctcttaacctatgatcgcttggctagcaccaggaactataggagaaccattc 307  Q
    ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37031697 gacacacattttgagaaaccctaaaggcaaaaatcaaaccctagttttctcttaacctatgatcgcttggctagcaccaggaactataggagaaccgttc 37031598  T
Q  308 ttgtggacgagtagag 323  Q
    ||||||||||||||||    
T  37031597 ttgtggacgagtagag 37031582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 8781472 - 8781301
Alignment:
Q  22 cacacaatataacagtcagaatgagaaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagttagtgaacactaatgggtta 121  Q
    |||||| ||||||  ||| || ||||||||||||||||||||||||  | ||||| |||||||||||||||||||||||||||   || | |||| | ||    
T  8781472 cacacagtataacgttcaaaaggagaaatataagtaagacttataacttggggtgtatttagcaaataacgctaattagttaggttacgcgaatgag-ta 8781374  T
Q  122 atgagcttacataagtccagtagtgattacttgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagtcag 207  Q
    ||| |||| |              |||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||    
T  8781373 atgggcttgc-------------ggattacttgacttgcaaagcacacaagtagttctataaatagaacccttgtgctgaagtcag 8781301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 18836182 - 18836235
Alignment:
Q  155 acttgcagaacacacaagtagttctataaatacaacccttgtgctgaagtcaga 208  Q
    |||||||||||||||  | ||||||||||||| |||||||||||||||||||||    
T  18836182 acttgcagaacacacttggagttctataaatagaacccttgtgctgaagtcaga 18836235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 8370719 - 8370668
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagt 204  Q
    ||||||||| |||||||||| ||||||||||||| |||||| ||||||||||    
T  8370719 tgacttgcataacacacaaggagttctataaatagaaccctagtgctgaagt 8370668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 14984115 - 14984173
Alignment:
Q  74 gtgcatttagcaaataacgctaattagttagtgaacactaatgggttaatgagcttaca 132  Q
    |||| |||||||||| ||||||||||||||| |||  |||||||||||||| |||||||    
T  14984115 gtgcttttagcaaatgacgctaattagttagcgaaagctaatgggttaatgggcttaca 14984173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 6431723 - 6431774
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagt 204  Q
    ||||||| ||| |||||||| ||||||||||||| |||||| ||||||||||    
T  6431723 tgacttgaagagcacacaaggagttctataaatagaaccctagtgctgaagt 6431774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 26241864 - 26241915
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagt 204  Q
    ||||||||| | |||||||| ||||||||||||| |||||| ||||||||||    
T  26241864 tgacttgcatagcacacaaggagttctataaatagaaccctagtgctgaagt 26241915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 26652757 - 26652706
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagt 204  Q
    ||||||||||| |||||||| ||||||||||||| |||||| ||||| ||||    
T  26652757 tgacttgcagagcacacaaggagttctataaatagaaccctagtgctaaagt 26652706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 6e-62; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 44 - 323
Target Start/End: Complemental strand, 5524365 - 5524081
Alignment:
Q  44 gagaaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagttagtgaacactaatgggttaatgagcttacataagtccagta 143  Q
    ||||||||||||||||||||||||||| || ||||||||||||||   ||||||||||||| |||  || ||||||||||| | ||||| ||| ||||||    
T  5524365 gagaaatataagtaagacttataagatgggctgcatttagcaaatgttgctaattagttagcgaaacctgatgggttaatgggattacaaaagcccagta 5524266  T
Q  144 gtgattacttgactt---gcagaacacacaagtagttctataaatacaacccttgtgctgaagtcaga-tgacacattttgagaaaccctaaaggcaaaa 239  Q
     ||||||||||||||   ||||| | |||||||||||||||||||| |||  ||||| |||||||||| | ||||||||||||||||||||||||| |||    
T  5524265 atgattacttgacttgcagcagagcgcacaagtagttctataaatagaacttttgtgttgaagtcagagttacacattttgagaaaccctaaaggcgaaa 5524166  T
Q  240 atcaaaccc--tagttttctcttaacctatgatcgcttggctagcaccaggaactataggagaaccattcttgtggacgagtagag 323  Q
    |||||||||  ||||||||||||||||  |||| | ||||||||| | |||||| | ||||||||| ||| |||||||||||||||    
T  5524165 atcaaaccctatagttttctcttaaccactgattgtttggctagc-ctaggaaccaaaggagaacctttcgtgtggacgagtagag 5524081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 23 - 206
Target Start/End: Original strand, 19374051 - 19374234
Alignment:
Q  23 acacaatataacagtcagaatgagaaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagttagt-gaacactaa-tgggtt 120  Q
    |||||| | |||||||| || ||||||||||| |||||||||||| || |||||| ||||||||||| | ||||||||||||  |||  |||| || |||    
T  19374051 acacaaaagaacagtcaaaaggagaaatataaataagacttataatat-gggtgcgtttagcaaatatcactaattagttagcagaaggctaaatgcgtt 19374149  T
Q  121 aatgagcttacataagtccagtagtgattacttgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagtca 206  Q
    |||| ||||||  ||| ||| |||||||| || |||||||||||||| | || ||||||||||||| |||||||||||||||||||    
T  19374150 aatgggcttacggaagaccaatagtgatttct-gacttgcagaacacgctaggagttctataaatagaacccttgtgctgaagtca 19374234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 9538663 - 9538845
Alignment:
Q  22 cacacaatataacagtcagaatgagaaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagttagtgaacactaa-tgggtt 120  Q
    ||||||||| |||  ||| || ||| |||||||||||||||||||  || |||||| ||||| |||||||  ||||| |||||  ||   ||| ||||||    
T  9538663 cacacaatagaacgatcaaaaggaggaatataagtaagacttatattat-gggtgcgtttagaaaataacattaattggttagcaaaagttaaatgggtt 9538761  T
Q  121 aatgagcttacataagtccagtagtgattacttgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagtc 205  Q
    ||   ||||||  ||| |||||||||| | || ||||| ||||||||||||| ||||||||||||| ||||||||||||||||||    
T  9538762 aacaggcttacggaagcccagtagtgactgct-gactttcagaacacacaagaagttctataaatagaacccttgtgctgaagtc 9538845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 208
Target Start/End: Original strand, 19363135 - 19363297
Alignment:
Q  44 gagaaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagttagtgaacactaatgggttaatgagcttacataagtccagta 143  Q
    ||||||||||||||||||||  |  || |||||| ||||||||||||| ||||| ||||||  ||   |||   ||||||| ||||||| ||| ||| ||    
T  19363135 gagaaatataagtaagacttgcattat-gggtgcgtttagcaaataacactaatcagttagcaaaagttaacaagttaatgggcttacagaagcccaata 19363233  T
Q  144 gtgattacttgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagtcaga 208  Q
    |||| | || ||| || |||||||||  | ||||||||||||| |||||||||||||||||||||    
T  19363234 gtgaattct-gacgtgtagaacacacttggagttctataaataaaacccttgtgctgaagtcaga 19363297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 206
Target Start/End: Original strand, 32637210 - 32637372
Alignment:
Q  44 gagaaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagttag-tgaacact-aatgggttaatgagcttacataagtccag 141  Q
    ||||||||||||||||||| |||| || ||||||  ||||||||||| |||||||||||||  |||   | |||| | ||||| ||||||  |||||||     
T  32637210 gagaaatataagtaagactaataatat-gggtgcgcttagcaaataatgctaattagttagcagaaggttgaatgcgctaatgggcttacggaagtccaa 32637308  T
Q  142 tagtgattacttgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagtca 206  Q
    |||||| | | ||||||||||| || |  || ||||||||||||| |||||||||||||||||||    
T  32637309 tagtgacttc-tgacttgcagagcatattaggagttctataaatataacccttgtgctgaagtca 32637372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 323
Target Start/End: Original strand, 9538887 - 9538945
Alignment:
Q  265 tatgatcgcttggctagcaccaggaactataggagaaccattcttgtggacgagtagag 323  Q
    |||||||||||||||||||| |||||| | ||||| ||||||| |||||||||||||||    
T  9538887 tatgatcgcttggctagcactaggaaccagaggagcaccattcgtgtggacgagtagag 9538945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 21161478 - 21161422
Alignment:
Q  267 tgatcgcttggctagcaccaggaactataggagaaccattcttgtggacgagtagag 323  Q
    ||||||||||||||| ||||||||||  ||||||||||||| ||||||| |||||||    
T  21161478 tgatcgcttggctagtaccaggaactggaggagaaccattcgtgtggacaagtagag 21161422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 11421712 - 11421770
Alignment:
Q  44 gagaaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagtta 103  Q
    ||||||||||||||||||||||| || ||||||| ||||| ||| |||||||||||||||    
T  11421712 gagaaatataagtaagacttatatga-tgggtgcgtttagaaaagaacgctaattagtta 11421770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 323
Target Start/End: Complemental strand, 10725305 - 10725223
Alignment:
Q  241 tcaaaccctagttttctcttaacctatgatcgcttggctagcaccaggaactataggagaaccattcttgtggacgagtagag 323  Q
    ||||||||||||| ||| | ||||| ||||||||||||||| ||| ||||| | |||||| |  ||| |||||||||||||||    
T  10725305 tcaaaccctagttctctatgaacctctgatcgcttggctagtaccgggaaccagaggagagctgttcgtgtggacgagtagag 10725223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 323
Target Start/End: Complemental strand, 10939074 - 10938992
Alignment:
Q  241 tcaaaccctagttttctcttaacctatgatcgcttggctagcaccaggaactataggagaaccattcttgtggacgagtagag 323  Q
    ||||||||||||| ||| | ||||| ||||||||||||||| ||| ||||| | |||||| |  ||| |||||||||||||||    
T  10939074 tcaaaccctagttctctatgaacctctgatcgcttggctagtaccgggaaccagaggagagctgttcgtgtggacgagtagag 10938992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 19374268 - 19374330
Alignment:
Q  261 aacctatgatcgcttggctagcaccaggaactataggagaaccattcttgtggacgagtagag 323  Q
    ||||| ||||||||||||| ||||| ||||||| ||||| ||| ||| |||||||||||||||    
T  19374268 aacctctgatcgcttggcttgcaccgggaactagaggagcaccgttcgtgtggacgagtagag 19374330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 11421821 - 11421873
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagtc 205  Q
    ||||||||||| ||||| || ||||||||||||| |||||| |||||||||||    
T  11421821 tgacttgcagagcacactaggagttctataaatagaaccctcgtgctgaagtc 11421873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 4546899 - 4546950
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagt 204  Q
    ||||||||||| |||| ||| ||||||||||||| |||||| ||||||||||    
T  4546899 tgacttgcagagcacataaggagttctataaatagaaccctagtgctgaagt 4546950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 9488382 - 9488433
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagt 204  Q
    ||||||||||| |||||||  ||||||||||||| |||||| ||||||||||    
T  9488382 tgacttgcagagcacacaaagagttctataaatataaccctagtgctgaagt 9488433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 15462337 - 15462388
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagt 204  Q
    ||||||||| | |||||||| ||||||||||||| |||||| ||||||||||    
T  15462337 tgacttgcatagcacacaaggagttctataaatagaaccctagtgctgaagt 15462388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 34976388 - 34976439
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagt 204  Q
    ||||||||| | |||||||| ||||||||||||| |||||| ||||||||||    
T  34976388 tgacttgcatagcacacaaggagttctataaatagaaccctagtgctgaagt 34976439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 30039971 - 30039918
Alignment:
Q  152 ttgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagtc 205  Q
    |||||||||||| ||||| || |||| |||||||| |||||| |||||||||||    
T  30039971 ttgacttgcagagcacactaggagttatataaatagaaccctagtgctgaagtc 30039918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 35224516 - 35224553
Alignment:
Q  165 cacacaagtagttctataaatacaacccttgtgctgaa 202  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  35224516 cacacaagtggttctataaatagaacccttgtgctgaa 35224553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 5667330 - 5667278
Alignment:
Q  151 cttgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaag 203  Q
    |||| ||||| || |||||||||  ||||||||||| ||||||||||||||||    
T  5667330 cttggcttgctgaccacacaagtgattctataaatagaacccttgtgctgaag 5667278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 45 - 255
Target Start/End: Complemental strand, 25845097 - 25844887
Alignment:
Q  45 agaaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagttagtgaacactaatgggttaatgagcttacataagtccagtag 144  Q
    |||||| ||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| |||  || |||||||| || ||||| | ||| ||| |||    
T  25845097 agaaatttaagtaagacttataagatggggtgcatttagcaaatgacgttaattagttagcgaaggctgatgggttagtgggcttatagaagcccattag 25844998  T
Q  145 tgattacttgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagtc-agatgacacattttgagaaaccctaaaggcaaaaatca 243  Q
    ||||||||||||||||||||||||||||||||| | |||||   | ||||||||||||||| |  | |||  |||||||| ||||||||||| |||||||    
T  25844997 tgattacttgacttgcagaacacacaagtagttatgtaaat-ggatccttgtgctgaagtcgaagttacaagttttgagagaccctaaaggcgaaaatca 25844899  T
Q  244 aaccctagtttt 255  Q
    |||| |||||||    
T  25844898 aaccttagtttt 25844887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 24442953 - 24442894
Alignment:
Q  44 gagaaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagttag 104  Q
    |||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||||||    
T  24442953 gagaaatataagtaagacttataatat-gggtgcgtttagaaaataacgctaattagttag 24442894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 31189948 - 31189889
Alignment:
Q  44 gagaaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagttag 104  Q
    |||||||| |||||||||||||| ||| |||||| ||||||||||||||||||||||||||    
T  31189948 gagaaatacaagtaagacttatatgat-gggtgcgtttagcaaataacgctaattagttag 31189889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 19389336 - 19389423
Alignment:
Q  111 ctaatgggttaatgagcttacataagtccagtagtgattacttgacttgcagaacacacaagtagttctataaatacaacccttgtgc 198  Q
    |||||||||||||| ||||| | ||| | || | ||||||| |||||||| || |||| ||||||||||||||||| |||||||||||    
T  19389336 ctaatgggttaatgggcttatagaagcctaggaatgattacctgacttgctgagcacataagtagttctataaatagaacccttgtgc 19389423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 18257143 - 18257084
Alignment:
Q  44 gagaaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagttag 104  Q
    ||||||||||| ||||||||||| ||| |||||||||||| |||||||| |||||||||||    
T  18257143 gagaaatataactaagacttatatgat-gggtgcatttagtaaataacgttaattagttag 18257084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 18258590 - 18258539
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagt 204  Q
    ||||||||||| |||||||| ||||||||||||| |||||| ||||||||||    
T  18258590 tgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagt 18258539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 15168892 - 15168810
Alignment:
Q  22 cacacaatataacagtcagaatgagaaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagttag 104  Q
    ||||||||| ||| |||| || ||||||||||||||||||||||||  | ||||| | ||||||||| |  ||||||||||||    
T  15168892 cacacaatagaacggtcaaaaagagaaatataagtaagacttataacttggggtgaaattagcaaatgaaactaattagttag 15168810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 8465835 - 8465886
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagt 204  Q
    ||||||||| | |||||||| ||||||||||||| |||||| ||||||||||    
T  8465835 tgacttgcatagcacacaaggagttctataaatagaaccctagtgctgaagt 8465886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 10666530 - 10666479
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagt 204  Q
    ||||||||||| ||||| || ||||||||||||| |||||| ||||||||||    
T  10666530 tgacttgcagagcacactaggagttctataaatagaaccctagtgctgaagt 10666479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 41680434 - 41680383
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagt 204  Q
    ||||||||||| |||||||| ||||||||||||| |||||| ||| ||||||    
T  41680434 tgacttgcagagcacacaaggagttctataaatagaaccctagtgttgaagt 41680383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 323
Target Start/End: Original strand, 12393547 - 12393632
Alignment:
Q  238 aaatcaaaccctagttttctcttaacctatgatcgcttggctagcaccaggaactataggagaaccattcttgtggacgagtagag 323  Q
    |||||||| | ||||| ||||| ||||| | |||| ||||||||||||  |||||| |||||| | |||| ||||||| |||||||    
T  12393547 aaatcaaatcatagttctctctgaacctttaatcgtttggctagcaccgagaactagaggagagctattcgtgtggactagtagag 12393632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 24442821 - 24442789
Alignment:
Q  174 agttctataaatacaacccttgtgctgaagtca 206  Q
    ||||||||||||| |||||||||||||||||||    
T  24442821 agttctataaatagaacccttgtgctgaagtca 24442789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 47 - 215
Target Start/End: Original strand, 19219251 - 19219417
Alignment:
Q  47 aaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagttagtgaac-actaatgg-gttaatgagcttacataagtccagtag 144  Q
    ||||||||||  |||||||||   ||||||| ||||||||||||||||||||||||||| ||  |||||  | ||||||| ||||||  ||||||| |||    
T  19219251 aaatataagttggacttataa---tgggtgcgtttagcaaataacgctaattagttagtaaaagactaaacgagttaatgggcttacgaaagtccaatag 19219347  T
Q  145 tgattacttgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagtcagatgacaca 215  Q
    | | | || ||||||||||||||||  | ||||||||||||| ||||||||||||||||||||||||||||    
T  19219348 taaattct-gacttgcagaacacacttggagttctataaatagaacccttgtgctgaagtcagatgacaca 19219417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 45 - 323
Target Start/End: Complemental strand, 10358628 - 10358372
Alignment:
Q  45 agaaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagttagtgaacactaatgggttaatgagcttacataagtccagtag 144  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| ||||||                |||| ||||||  ||| || ||||    
T  10358628 agaaatataagtaagacttataaga-tgggtgcctttagcaaataacactaatcagttag---------------caatgggcttactgaagcccggtag 10358545  T
Q  145 tgattacttgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagtcaga-tgacacatttt--gagaaaccctaaaggcaaaaat 241  Q
    |||||||||| |||||| | |||||||||||||||| ||||| ||| |||||| |||||||| | | |||| ||||  ||||||||||||||       |    
T  10358544 tgattacttggcttgca-agcacacaagtagttcta-aaatagaactcttgtgttgaagtcaaagttacacgtttttggagaaaccctaaag------tt 10358453  T
Q  242 caaaccctagttttctcttaacctatgatcgcttggctagcaccaggaactataggagaaccattcttgtggacgagtagag 323  Q
     |||||||| || ||  | |||||  |||||||| |||||||||| |||||| ||||||||||||| |||||||||||||||    
T  10358452 gaaaccctaattctcgatgaacctccgatcgctt-gctagcaccatgaactagaggagaaccattcgtgtggacgagtagag 10358372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 14075316 - 14075367
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagt 204  Q
    |||||||||||||||||||| ||||||||||||| |||||| ||||||||||    
T  14075316 tgacttgcagaacacacaaggagttctataaatagaaccctagtgctgaagt 14075367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 19734842 - 19734762
Alignment:
Q  22 cacacaatataacagtcagaatgagaaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagttag 104  Q
    ||||||| | |||||||| || ||||||||||||||||| ||||| ||| |||||| |||||||||||||  |||||||||||    
T  19734842 cacacaaaagaacagtcaaaa-gagaaatataagtaagagttatatgat-gggtgcgtttagcaaataacattaattagttag 19734762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 19735117 - 19735037
Alignment:
Q  22 cacacaatataacagtcagaatgagaaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagttag 104  Q
    ||||||| | |||||||| || ||||||||||||||||| ||||| ||| |||||| |||||||||||||  |||||||||||    
T  19735117 cacacaaaagaacagtcaaaa-gagaaatataagtaagagttatatgat-gggtgcgtttagcaaataacattaattagttag 19735037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 13194769 - 13194846
Alignment:
Q  126 gcttacataagtccagtagtgattacttgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaag 203  Q
    ||||||||||| | | || ||||| ||||||||||| |  |||||||| |||||||||||| |||| |||||||||||    
T  13194769 gcttacataagcctaataatgattgcttgacttgcaaagaacacaagtggttctataaatagaacctttgtgctgaag 13194846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 33317701 - 33317752
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagt 204  Q
    ||||||||||| |||||||| ||||||||||||| ||||||  |||||||||    
T  33317701 tgacttgcagagcacacaagaagttctataaatagaaccctattgctgaagt 33317752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 21995663 - 21995743
Alignment:
Q  22 cacacaatataacagtcagaatgagaaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagttag 104  Q
    ||||||| | |||||||| || ||||||||||| ||||||||||| || ||||||| ||||| || |||| ||||||||||||    
T  21995663 cacacaagagaacagtcaaaa-gagaaatataaataagacttatatga-tgggtgcgtttagaaattaacactaattagttag 21995743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 4074198 - 4074265
Alignment:
Q  118 gttaatgagcttacataagtccagtagtgattacttgacttgcagaacacacaagtagttctataaata 186  Q
    ||||||||||||||| |||| || |||||||||||| |||| | || ||||||| ||||| ||||||||    
T  4074198 gttaatgagcttacagaagttcaatagtgattacttaacttacggagcacacaaatagtt-tataaata 4074265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 320
Target Start/End: Complemental strand, 28719237 - 28719007
Alignment:
Q  87 ataacgctaattagttagtgaacactaatgggttaatgagcttacataagtccagtagtgattacttgacttgcagaacacacaagtagttctataaata 186  Q
    ||||||| ||||||||||  ||  |||||||||||| | |||||   ||| ||| |||||||||||||  ||||||| ||||||||||||||||||||||    
T  28719237 ataacgcgaattagttagataatgctaatgggttaacgggcttattgaagcccaatagtgattacttggtttgcagagcacacaagtagttctataaata 28719138  T
Q  187 caacccttgtgctgaagtcaga-tgacacatttt--gagaaaccctaaaggcaaaaatcaaaccctagttttctcttaacctatgatcgcttggctagca 283  Q
     ||| |||||| |||||| ||| | |||  ||||  ||||||||||||||       | |||||||| || || || ||||| |||||||||||||||||    
T  28719137 gaactcttgtgttgaagttagagttacaagtttttggagaaaccctaaag------ttgaaaccctaattctcactcaacctctgatcgcttggctagca 28719044  T
Q  284 ccaggaactataggagaaccattcttgtggacgagta 320  Q
       ||||||| ||||||||| ||| ||||||||||||    
T  28719043 ttgggaactagaggagaaccgttcgtgtggacgagta 28719007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 39428275 - 39428327
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagtc 205  Q
    |||||||||||||||||||| ||||||||||||| |||||| |||||||||||    
T  39428275 tgacttgcagaacacacaaggagttctataaatagaaccctggtgctgaagtc 39428327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 31097652 - 31097703
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagt 204  Q
    ||||||||| |||||||||| ||||||||||||| |||||| ||||||||||    
T  31097652 tgacttgcataacacacaagaagttctataaatagaaccctagtgctgaagt 31097703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 323
Target Start/End: Complemental strand, 20084513 - 20084433
Alignment:
Q  243 aaaccctagttttctcttaacctatgatcgcttggctagcaccaggaactataggagaaccattcttgtggacgagtagag 323  Q
    |||||||| || |||| |||||| | |||| |||||||||||| ||||||| ||||| ||| ||| ||||||| |||||||    
T  20084513 aaaccctaattctctcataacctcttatcgtttggctagcaccgggaactagaggagcaccgttcgtgtggactagtagag 20084433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 31651265 - 31651202
Alignment:
Q  139 cagtagtgattacttgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaa 202  Q
    |||||||||||  ||||||| |||| ||||||| | |||||||||||| |||| ||||||||||    
T  31651265 cagtagtgattgtttgacttacagagcacacaaattgttctataaatagaaccattgtgctgaa 31651202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 39536017 - 39536072
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagtcaga 208  Q
    ||||||||| | |||||  | ||||||||||||| |||||||||||||||||||||    
T  39536017 tgacttgcatagcacacttggagttctataaatagaacccttgtgctgaagtcaga 39536072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 20099876 - 20099820
Alignment:
Q  47 aaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagttag 104  Q
    ||||||||||||||||||||  || || | ||||||||||||||| ||||||||||||    
T  20099876 aaatataagtaagacttatattat-ggatacatttagcaaataacactaattagttag 20099820  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 9811199 - 9811159
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaaccct 193  Q
    ||||||||||| |||||||| ||||||||||||| ||||||    
T  9811199 tgacttgcagagcacacaaggagttctataaatagaaccct 9811159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 12703440 - 12703400
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaaccct 193  Q
    ||||||||||| |||||||| ||||||||||||| ||||||    
T  12703440 tgacttgcagagcacacaaggagttctataaatagaaccct 12703400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 12764456 - 12764416
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaaccct 193  Q
    ||||||||||| |||||||| ||||||||||||| ||||||    
T  12764456 tgacttgcagagcacacaaggagttctataaatagaaccct 12764416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 25804851 - 25804803
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctga 201  Q
    ||||||||| | |||||||| ||||||||||||| |||||| |||||||    
T  25804851 tgacttgcatagcacacaaggagttctataaatagaaccctagtgctga 25804803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 208
Target Start/End: Original strand, 26817022 - 26817182
Alignment:
Q  47 aaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagttagtgaacact-aatgggttaatgagcttacataagtccagtagt 145  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||| |||| ||||||  ||  || |||| ||||||| ||||||  ||  ||| || |    
T  26817022 aaatataagtaagacttataaga-tgggtgcgtttagcaaataacgttaatcagttagcaaatgctaaatgtgttaatgggcttacggaatcccaataat 26817120  T
Q  146 gattacttgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagtcaga 208  Q
    | || | |||||| ||||||||||||| |||||||| |||| |||||||||| ||||||||||    
T  26817121 gttttc-tgacttacagaacacacaaggagttctatcaatagaacccttgtgttgaagtcaga 26817182  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 206
Target Start/End: Original strand, 14147745 - 14147907
Alignment:
Q  44 gagaaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagttagtgaa-cactaatgggtt-aatgagcttacataagtccag 141  Q
    |||||||||||||||||| |||| ||| | || |||||||||||| ||| |||||||||||  || ||||||  | || |||| ||||||  |||  ||     
T  14147745 gagaaatataagtaagacatatatgat-gcgtacatttagcaaatcacgttaattagttagcaaaacactaaacgatttaatgggcttacggaagctcaa 14147843  T
Q  142 tagtgattacttgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagtca 206  Q
    |||||| | || |||||| ||| ||||  || | |||||||||||||||||||||||||||||||    
T  14147844 tagtgacttct-gacttgtagagcacaataggatttctataaatacaacccttgtgctgaagtca 14147907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 21399630 - 21399681
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagt 204  Q
    ||||||||| | |||||||| ||||||||||||| |||||| ||||||||||    
T  21399630 tgacttgcatagcacacaaggagttctataaatagaaccctagtgctgaagt 21399681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 25978193 - 25978142
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagt 204  Q
    ||||||||||| |||||||| ||||||||||||| ||||||  |||||||||    
T  25978193 tgacttgcagagcacacaaggagttctataaatagaaccctaatgctgaagt 25978142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 23014591 - 23014553
Alignment:
Q  165 cacacaagtagttctataaatacaacccttgtgctgaag 203  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  23014591 cacacaagtggttctataaatagaacccttgtgctgaag 23014553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 29801176 - 29801257
Alignment:
Q  22 cacacaatataacagtcagaatgagaaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagttag 104  Q
    ||||||||| ||| |||| || |||||||||||||||||||||||||| ||||||| |||| |||||||| ||||||| ||||    
T  29801176 cacacaatagaacggtcaaaaggagaaatataagtaagacttataaga-tgggtgcgtttaacaaataacactaattatttag 29801257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 20687020 - 20686939
Alignment:
Q  22 cacacaatataacagtcagaatgagaaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagtta 103  Q
    ||||||||| ||| |||| || ||||||||||||||||||||||||  | |||||| |||||||||||||| | ||||||||    
T  20687020 cacacaatagaacggtcaaaaggagaaatataagtaagacttataacttggggtgcgtttagcaaataacgtttattagtta 20686939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 24763248 - 24763189
Alignment:
Q  44 gagaaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagttag 104  Q
    ||||||||||||||||||||||| ||| ||||| |||||| ||||||||||||||||||||    
T  24763248 gagaaatataagtaagacttatatgat-gggtgtatttagtaaataacgctaattagttag 24763189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 15341618 - 15341559
Alignment:
Q  44 gagaaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagttag 104  Q
    ||||| |||||||||||||||||||| ||||||  ||||||| ||||||||||||||||||    
T  15341618 gagaactataagtaagacttataaga-tgggtgtgtttagcagataacgctaattagttag 15341559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 24228681 - 24228629
Alignment:
Q  152 ttgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagt 204  Q
    |||||||||||| |||||||| ||||||||||||| |||||| ||||||||||    
T  24228681 ttgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagt 24228629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 15341509 - 15341458
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagt 204  Q
    ||||||||||||||||| || | ||||||||||| ||||||| |||||||||    
T  15341509 tgacttgcagaacacactaggaattctataaatagaacccttatgctgaagt 15341458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 19617268 - 19617323
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagtcaga 208  Q
    ||||||||| |||||||  | ||||||||||||| ||| |||||||||||||||||    
T  19617268 tgacttgcataacacacttgaagttctataaatagaacacttgtgctgaagtcaga 19617323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 37444003 - 37444054
Alignment:
Q  154 gacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagtc 205  Q
    |||||||||| ||||| || ||||||||||||  ||||||||||||||||||    
T  37444003 gacttgcagagcacactaggagttctataaattgaacccttgtgctgaagtc 37444054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 24763140 - 24763087
Alignment:
Q  152 ttgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagtc 205  Q
    |||||||||| | ||||| || ||||||||||||| |||||| |||||||||||    
T  24763140 ttgacttgcaaagcacactaggagttctataaatagaaccctggtgctgaagtc 24763087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 19617159 - 19617218
Alignment:
Q  44 gagaaatataagtaagacttataagattgggtgcatttagcaaataacgctaattagttag 104  Q
    |||||||||||||| |||||||| ||| | || | ||||| ||||||||||||||||||||    
T  19617159 gagaaatataagtatgacttatatgat-gtgtacgtttagtaaataacgctaattagttag 19617218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 115 - 204
Target Start/End: Original strand, 35132705 - 35132794
Alignment:
Q  115 tgggttaatgagcttacataagtccagtagtgattacttgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagt 204  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||||||  || ||| |  || |||||||| |||||||||| ||||||    
T  35132705 tgggttaatgggcttacataagcccagtagtgattgcttgacttgcagagaacgcaaatgattttataaatagaacccttgtgatgaagt 35132794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 9916100 - 9916012
Alignment:
Q  113 aatgggttaatgagcttacataagtccagtagtgattacttgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaa 202  Q
    ||||||||| || ||||||||||   || |||||| | ||||||||||||| ||||||||| ||||||| |||| |||||||||||||||    
T  9916100 aatgggttattgggcttacataatctcaatagtgactgcttgacttgcagagcacacaagtggttctat-aatagaacccttgtgctgaa 9916012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 31234249 - 31234170
Alignment:
Q  117 ggttaatgagcttacataagtccagtagtgattacttgacttgcagaacacacaagtagttctataaatacaacccttgt 196  Q
    ||||| ||||||||||||||   |||| ||| || |||||||||||| ||||||||| |||| ||||||| |||||||||    
T  31234249 ggttattgagcttacataagcttagtaatgactatttgacttgcagagcacacaagttgttcaataaataaaacccttgt 31234170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 28134189 - 28134138
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagt 204  Q
    ||||||||| | |||||||| ||||||||||||| |||||| ||||||||||    
T  28134189 tgacttgcatagcacacaaggagttctataaatagaaccctagtgctgaagt 28134138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 43801831 - 43801782
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaa 202  Q
    ||||||||| | |||||||| ||||||||||||| |||||| ||||||||    
T  43801831 tgacttgcatagcacacaaggagttctataaatagaaccctagtgctgaa 43801782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 108591 - 108536
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagtcaga 208  Q
    |||||| || |||||| ||| ||||||||||||| |||||||||||||||||||||    
T  108591 tgacttacataacacataaggagttctataaatagaacccttgtgctgaagtcaga 108536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 27375 - 27426
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagt 204  Q
    ||||||||||| ||||| || | ||||||||||| |||||||||||||||||    
T  27375 tgacttgcagagcacactagaatttctataaatagaacccttgtgctgaagt 27426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 138174 - 138123
Alignment:
Q  153 tgacttgcagaacacacaagtagttctataaatacaacccttgtgctgaagt 204  Q
    ||||||||| | |||||||| ||||||||||||| |||||| ||||||||||    
T  138174 tgacttgcatagcacacaaggagttctataaatagaaccctagtgctgaagt 138123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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