View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20689_low_6 (Length: 240)
Name: NF20689_low_6
Description: NF20689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20689_low_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 4761493 - 4761718
Alignment:
| Q |
17 |
aatttggggcagtgcacactcatctaacattaatgaacacttaatatatattttcataatttttcatttgctataaaatctgatctggatcgttagctgt |
116 |
Q |
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| T |
4761493 |
aatttggggcagtgcacactcatctaacattaatgaacacttaatatatattttcataatttttcatttgctataaaatctgatctggatcgttagctgt |
4761592 |
T |
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| Q |
117 |
gatat--tctcacatgcattagtgatttgatgatactaagttttattgcattccttcattaagttccttgatttgttgttatgccaacgtgacgtgagaa |
214 |
Q |
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| T |
4761593 |
gatatattctcacatgcattagtgatttgatgatactaagttttattgcattccttcattaagttccttgatttgttgttatgccaacatgacgtgagaa |
4761692 |
T |
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| Q |
215 |
aacaagttaaatataaaccctcaatt |
240 |
Q |
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| T |
4761693 |
aacaagttaaatataaaccctcaatt |
4761718 |
T |
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