View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2068_low_1 (Length: 386)
Name: NF2068_low_1
Description: NF2068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2068_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 368
Target Start/End: Complemental strand, 39136645 - 39136291
Alignment:
| Q |
15 |
atgaacaaggcaagcacctcataccattattatgctttacataatgttactcattaaatctttgctcatgatttgggattaaagtccatggtnnnnnnnn |
114 |
Q |
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| T |
39136645 |
atgaacaaggcaagcacctcataccattattatgctttacataatgttactcattaaatctttgctcatgatttgggattaaagtccatggtaaaaaata |
39136546 |
T |
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| Q |
115 |
nnnntgttcgcagcttaaagctcttcgaaccatacnnnnnnnnnn-gacaaaattgaaccatacttatttagtaaccaagtccgagaaagattattgaaa |
213 |
Q |
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| T |
39136545 |
aaaatgttcgcagcttaaagctctttgaaccatactttttttttttgacaaaattgaaccatacttatttagtaaccaagtccgagaaagattattgaaa |
39136446 |
T |
|
| Q |
214 |
agaggttgnnnnnnnntcaattaatgtgtatttacttttagtaccttaaaaaggnnnnnnngtacggatgaggtaaaaatgtgttggaacaattaatttt |
313 |
Q |
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| T |
39136445 |
agaggttgaaaaaaaatcaattaatgtgtatttacttttagtaccttaaaaaggtttttttgtacggatgaggtaaaaatgtgttggaacaattaatttt |
39136346 |
T |
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| Q |
314 |
gaagactaaaatcacagtaggtagtattaaattgtgccaatttaggtaagtaatt |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39136345 |
gaagactaaaatcacagtaggtagtattaaattgtgccaatttaggtaagtaatt |
39136291 |
T |
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