View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2068_low_4 (Length: 261)

Name: NF2068_low_4
Description: NF2068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2068_low_4
NF2068_low_4
[»] chr4 (6 HSPs)
chr4 (1-243)||(55705913-55706155)
chr4 (130-243)||(45876736-45876849)
chr4 (111-242)||(47293489-47293620)
chr4 (111-243)||(54304256-54304388)
chr4 (109-243)||(56208510-56208644)
chr4 (142-243)||(45858817-45858918)
[»] chr5 (3 HSPs)
chr5 (129-242)||(35854575-35854688)
chr5 (107-242)||(10521334-10521469)
chr5 (199-242)||(35802504-35802547)
[»] chr8 (2 HSPs)
chr8 (112-242)||(7972058-7972188)
chr8 (113-242)||(7961689-7961818)
[»] chr2 (1 HSPs)
chr2 (142-244)||(24357486-24357588)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 55706155 - 55705913
Alignment:
Q  1 ctacaaagaatcgagttgatcattcacagatcctggaatggtgtaggcagatggatatccatccaaattctaaaacatggtccatcagaatgtgctaagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55706155 ctacaaagaatcgagttgatcattcacagatcctggaatggtgtaggcagatggatatccatccaaattctaaaacatggtccatcagaatgtgctaagt 55706056  T
Q  101 ccatcagatcttgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgcaatagcaatagcacgcgatatcccaccaatag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  55706055 ccatcagatcttgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgtaatagcaatagcacgcgatatcccaccaatag 55705956  T
Q  201 catcaaccaaaccatgagatgctgcgtctttaccggtccaaac 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  55705955 catcaaccaaaccatgagatgctgcgtctttaccggtccaaac 55705913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 45876736 - 45876849
Alignment:
Q  130 aacctctctgttttgaggtatattagctttcaattttgcaatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtct 229  Q
    ||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| |||||||| ||     
T  45876736 aacctgtctgtcttgaggtatattagctttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccatgggatgctgcatcc 45876835  T
Q  230 ttaccggtccaaac 243  Q
    ||||||||||||||    
T  45876836 ttaccggtccaaac 45876849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 47293620 - 47293489
Alignment:
Q  111 ttgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgcaatagcaatagcacgcgatatcccaccaatagcatcaaccaa 210  Q
    ||||| ||||||||| | | |||| |||||||||||||||||| || ||||||||||| ||||||||||| |||||||  ||||||||||||||||||||    
T  47293620 ttgagcgctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaa 47293521  T
Q  211 accatgagatgctgcgtctttaccggtccaaa 242  Q
    |||||||||| ||||||| |||| ||||||||    
T  47293520 accatgagatactgcgtccttactggtccaaa 47293489  T

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Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 54304388 - 54304256
Alignment:
Q  111 ttgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgcaatagcaatagcacgcgatatcccaccaatagcatcaaccaa 210  Q
    ||||||| || |||| | ||||||| || |||||||||||||| || ||||||||||| |||||||||||||| || ||||| |||||||||||||||||    
T  54304388 ttgagagttcaacaagagtaacctcactattttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaa 54304289  T
Q  211 accatgagatgctgcgtctttaccggtccaaac 243  Q
    |||  |||||| |||||| ||||| ||||||||    
T  54304288 accgagagatgttgcgtccttaccagtccaaac 54304256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 56208510 - 56208644
Alignment:
Q  109 tcttgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgcaatagcaatagcacgcgatatcccaccaatagcatcaacc 208  Q
    ||||||||  ||||||||| |||| | | ||| ||||||||||  ||| ||||||||||| |||||||||||||| |||| |||||||||||||||||||    
T  56208510 tcttgagatgtccacaacagtaacatgtttgtcttgaggtataccagccttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaacc 56208609  T
Q  209 aaaccatgagatgctgcgtctttaccggtccaaac 243  Q
    |||||| |||||  ||| |||||||||||| ||||    
T  56208610 aaaccaagagatagtgcatctttaccggtctaaac 56208644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 45858817 - 45858918
Alignment:
Q  142 ttgaggtatattagctttcaattttgcaatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtctttaccggtccaa 241  Q
    |||||||||||| || |||||||| || |||||||||||||| |||| |||||||||||||||||||| |||||||||| |||| || ||||||||||||    
T  45858817 ttgaggtatattggccttcaatttggctatagcaatagcacgtgatagcccaccaatagcatcaaccagaccatgagatactgcatccttaccggtccaa 45858916  T
Q  242 ac 243  Q
    ||    
T  45858917 ac 45858918  T

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Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 129 - 242
Target Start/End: Complemental strand, 35854688 - 35854575
Alignment:
Q  129 taacctctctgttttgaggtatattagctttcaattttgcaatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtc 228  Q
    |||||| |||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35854688 taacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtc 35854589  T
Q  229 tttaccggtccaaa 242  Q
     |||||||||||||    
T  35854588 cttaccggtccaaa 35854575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 107 - 242
Target Start/End: Complemental strand, 10521469 - 10521334
Alignment:
Q  107 gatcttgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgcaatagcaatagcacgcgatatcccaccaatagcatcaa 206  Q
    |||||||||||||| |||| | |||||| | |||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||    
T  10521469 gatcttgagagctcgacaagattaacctgtttgttttgaggtatattggccttgaattttgcgatagcaatagcacgcgatatcccaccaatagcatcaa 10521370  T
Q  207 ccaaaccatgagatgctgcgtctttaccggtccaaa 242  Q
    ||||||| |||||||||||||| || ||| ||||||    
T  10521369 ccaaaccttgagatgctgcgtccttcccgatccaaa 10521334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 35802504 - 35802547
Alignment:
Q  199 agcatcaaccaaaccatgagatgctgcgtctttaccggtccaaa 242  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  35802504 agcatcaaccaaaccatgagatgctgcgtccttaccggtccaaa 35802547  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 112 - 242
Target Start/End: Original strand, 7972058 - 7972188
Alignment:
Q  112 tgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgcaatagcaatagcacgcgatatcccaccaatagcatcaaccaaa 211  Q
    |||||||||||||| | |||| | |||||||||||| | ||| || ||||||||||| |||||||||||||||||||  ||||  |||||||| ||||||    
T  7972058 tgagagctccacaatagtaacatgtctgttttgaggaagattggccttcaattttgctatagcaatagcacgcgatagtccactgatagcatcgaccaaa 7972157  T
Q  212 ccatgagatgctgcgtctttaccggtccaaa 242  Q
    |||| |||| |||| ||||||||||||||||    
T  7972158 ccattagatactgcatctttaccggtccaaa 7972188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 242
Target Start/End: Original strand, 7961689 - 7961818
Alignment:
Q  113 gagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgcaatagcaatagcacgcgatatcccaccaatagcatcaaccaaac 212  Q
    |||| |||||||| | |||| | | |||||||||| ||||| || ||||||||||| |||||||||||  ||||||| |||||||||||||| ||||||     
T  7961689 gagaactccacaatagtaacatgtttgttttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaat 7961788  T
Q  213 catgagatgctgcgtctttaccggtccaaa 242  Q
    ||| ||||  ||| |||||||| |||||||    
T  7961789 cattagatattgcatctttaccagtccaaa 7961818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 24357588 - 24357486
Alignment:
Q  142 ttgaggtatattagctttcaattttgcaatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtctttaccggtccaa 241  Q
    |||||||||||| || ||||||||||| || |||||||| || || |  |||||||||||||||||||||||||| |||||||| |||||||| ||||||    
T  24357588 ttgaggtatattggccttcaattttgctatggcaatagctcgggaaaggccaccaatagcatcaaccaaaccatgtgatgctgcatctttaccagtccaa 24357489  T
Q  242 act 244  Q
    |||    
T  24357488 act 24357486  T

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