View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2068_low_5 (Length: 250)
Name: NF2068_low_5
Description: NF2068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2068_low_5 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 21122626 - 21122862
Alignment:
| Q |
14 |
gaactccaaacattaggagcattcaaggacaaattgcagatatgttaaactttaaattgggggaagaaagtgaagatggaagagcacaacgtctatggtt |
113 |
Q |
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| T |
21122626 |
gaactccaaacattaggagcattcaaggacaaattgcagatatgttaaacttgaaattgggggaagaaagtgaagatggaagagcacaacgtctatggtt |
21122725 |
T |
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| Q |
114 |
gcgtttaaaagaaataaagagaactcttataatagttgacaatctatggagagagtttcatttgaaggatacagggattcgcttaaacaatgataataga |
213 |
Q |
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| T |
21122726 |
gcgtttaaaagaaatgaagagaactcttataatagttgacaatctatggagagagtttcatttgaaggatacagggattcgcttatacaatgataataga |
21122825 |
T |
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| Q |
214 |
ggtgcattgaaaatccttgtaaccacacgtattgaga |
250 |
Q |
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| T |
21122826 |
ggtgcattgaaaatccttgtaaccacacgtattgaga |
21122862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 178
Target Start/End: Original strand, 21115200 - 21115363
Alignment:
| Q |
15 |
aactccaaacattaggagcattcaaggacaaattgcagatatgttaaactttaaattgggggaagaaagtgaagatggaagagcacaacgtctatggttg |
114 |
Q |
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||||||||| ||||| ||||||| ||| || ||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||| |||||||| |
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| T |
21115200 |
aactccaaatattagaggcattcagggaaaacttgcagatatgttaaacttgaaattggaggaagaaagtgaagagggaagagcacaacgtttatggttg |
21115299 |
T |
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| Q |
115 |
cgtttaaaagaaataaagagaactcttataatagttgacaatctatggagagagtttcatttga |
178 |
Q |
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| T |
21115300 |
tgtttaaaacaaaagaagcgaattcttataatagtggacgatctatggagagagtttcatttga |
21115363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 244
Target Start/End: Complemental strand, 21715745 - 21715534
Alignment:
| Q |
33 |
cattcaaggacaaattgcagatatgttaaactttaaattgggggaagaaagtgaagatggaagagcacaacgtctatggttgcgtttaaaagaaataaag |
132 |
Q |
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| T |
21715745 |
cattcaaggaaaaatggcagacatgttaaacttgaaactcaaggaagaaagcgaagagggaagagcacaacggttgtggttgagtttgaaagaaaataaa |
21715646 |
T |
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| Q |
133 |
agaactcttataatagttgacaatctatggagagagtttcatttgaaggatacagggattcgcttaaacaatgataatagaggtgcattgaaaatccttg |
232 |
Q |
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| T |
21715645 |
cgaattcttgttataattgatgatttatggaaagagtttaatttgatgaatatagggattcacatagacaatgttaacaagggcgcatggaaaatccttg |
21715546 |
T |
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| Q |
233 |
taaccacacgta |
244 |
Q |
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| T |
21715545 |
taaccactcgta |
21715534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 244
Target Start/End: Complemental strand, 23010646 - 23010436
Alignment:
| Q |
34 |
attcaaggacaaattgcagatatgttaaactttaaattgggggaagaaagtgaagatggaagagcacaacgtctatggttgcgtttaaaagaaataaaga |
133 |
Q |
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||||||||| |||| || ||| | || ||| | ||||||| |||||||||||| || ||||||||||||||| | |||||| |||| ||||||| ||| |
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| T |
23010646 |
attcaaggaaaaatagctgatgttttgaacatgaaattggaggaagaaagtgatgagggaagagcacaacgtttgtggttgagtttgaaagaaaagaagc |
23010547 |
T |
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| Q |
134 |
gaactcttataatagttgacaatctatggagagagtttcatttgaaggatacagggattcgcttaaacaatgataatagaggtgcattgaaaatccttgt |
233 |
Q |
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| T |
23010546 |
ggattctcgtaatagtagatgatttatggagagagtttgatttgaacgatgtagggattcgcttagacaatgataacaagggtgcatggaagatccttgc |
23010447 |
T |
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| Q |
234 |
aaccacacgta |
244 |
Q |
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|||||| |||| |
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| T |
23010446 |
aaccactcgta |
23010436 |
T |
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