View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2068_low_6 (Length: 238)
Name: NF2068_low_6
Description: NF2068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2068_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 226
Target Start/End: Complemental strand, 43742242 - 43742021
Alignment:
| Q |
5 |
gattttttatgtgaaaacaacgataacgggcctgacaagatcaatgttatgagatcagttgttccaggttgaccaaggaaaatgctttctggttttacaa |
104 |
Q |
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| T |
43742242 |
gattttttatgtgaaaacaaagataacgggcctgacaagatcaatgttatgagatcagttgttccaggttgaccaagaaaaatgctttctggttttacaa |
43742143 |
T |
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| Q |
105 |
ctctatgaatccaagaaatgccataaaaagcagagtactcgtgaattccaaattaagaattagataataaaattacaacattgaaaacttgtaaattgaa |
204 |
Q |
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| T |
43742142 |
ctctatgaatccaagaaatgccataaaaagcagagtactcgtgaattccaaattaagaattagataataaaattacaacattgaaaacttgtaaattgaa |
43742043 |
T |
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| Q |
205 |
atggagataaagtgacatattt |
226 |
Q |
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| T |
43742042 |
atggagataaagtgacatattt |
43742021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 5 - 113
Target Start/End: Complemental strand, 43439710 - 43439602
Alignment:
| Q |
5 |
gattttttatgtgaaaacaacgataacgggcctgacaagatcaatgttatgagatcagttgttccaggttgaccaaggaaaatgctttctggttttacaa |
104 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43439710 |
gattttttatgtgaaaacaaagataacgggcctgacaagatcaatgttatgagatcagttgttccaggttgaccaagcaaaatgctttctggttttacaa |
43439611 |
T |
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| Q |
105 |
ctctatgaa |
113 |
Q |
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| T |
43439610 |
ctctatgaa |
43439602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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