View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20690_high_4 (Length: 371)
Name: NF20690_high_4
Description: NF20690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20690_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 34437703 - 34437348
Alignment:
| Q |
1 |
aggagaaccattccaagatacgttgaattctctcaattgagttttgttaagtttctccacttctgcaaagtacaagtagatattgaatttcaaatttgga |
100 |
Q |
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||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
34437703 |
aggagaaccattccaagatacgtcgaattctctcaactgagttttgttaagtttctccacttctgcaaagtacaagtagacattgaatttcaaatttcga |
34437604 |
T |
|
| Q |
101 |
tcatctgaaatccaagaaaattccaaactatcattctcattccttggtgtagcagcattcctaataacttcaaatggtggtttatagccatctccactaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34437603 |
tcatctgaaatccaagaaaattccaaactatcattctcattccttggtgtagcagcattcctaataacttcaaatggtggtttatagccatctccactaa |
34437504 |
T |
|
| Q |
201 |
catcaatttttgaagaagtgtttatagatttccatgaagaggaattaagaggaaaccaaattctatcataaacatcatcttgatatctaccacttccatt |
300 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34437503 |
catctatttttgaagaagtgcttatagatttccatgaagaggatttaagaggaaaccaaattctatcataaacatcatcttgatatctaccacttccatt |
34437404 |
T |
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| Q |
301 |
aaatgaaccaatgtcccatcttttgaaaagtaacaatgaagcagaatcaccaaact |
356 |
Q |
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| T |
34437403 |
aaatgaaccaatgtcccatcttttgaaaagtaacaatgaagcagaatcaccaaact |
34437348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 34444450 - 34444095
Alignment:
| Q |
1 |
aggagaaccattccaagatacgttgaattctctcaattgagttttgttaagtttctccacttctgcaaagtacaagtagatattgaatttcaaatttgga |
100 |
Q |
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||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||||| |
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| T |
34444450 |
aggagaaccattccaagatacattgaattttctcaactgagttttgttaagtttctcaaattcagcaaagtacaagtagacattgaatttcaaatttgga |
34444351 |
T |
|
| Q |
101 |
tcatctgaaatccaagaaaattccaaactatcattctcattccttggtgtagcagcattcctaataacttcaaatggtggtttatagccatctccactaa |
200 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||| |
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| T |
34444350 |
tcatctgaaatccaagaaaaatccaaactaacattctcattccttggtgtagcagcattgctaataacttcaaacggtgctttatagccatctccactaa |
34444251 |
T |
|
| Q |
201 |
catcaatttttgaagaagtgtttatagatttccatgaagaggaattaagaggaaaccaaattctatcataaacatcatcttgatatctaccacttccatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
34444250 |
catcaatttttgaagaagtgtttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatctaccacttccatt |
34444151 |
T |
|
| Q |
301 |
aaatgaaccaatgtcccatcttttgaaaagtaacaatgaagcagaatcaccaaact |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34444150 |
aaatgaaccaatgtcccatcttttgaaaagtaacaatgaagcagaatcaccgaact |
34444095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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