View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20690_low_3 (Length: 417)
Name: NF20690_low_3
Description: NF20690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20690_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 31828191 - 31828429
Alignment:
| Q |
19 |
aaaacccgtattataagggttgtttttattacttgtactttcatctcattctctgctttttcaactttaacccttcttgaagcaaccaacttcattgttt |
118 |
Q |
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| T |
31828191 |
aaaacccgtattataagggttgtttttattacttgtactttcatctcattctctactttttcaactttaacccttcttgaagcaaccaacttcattgttt |
31828290 |
T |
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| Q |
119 |
caacacaaaaaactatattagattgaagaaacaaaatctatatgaagctgtatcaacaatgagagatgataacttgaagaaaagcaaggtttgttttgta |
218 |
Q |
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| T |
31828291 |
caacacaaaaaactatattagattgaagaaacaaaatctatatgaagctgtatcaacaatgagagatgataacttgaagaaaagcaaggtttgttttgta |
31828390 |
T |
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| Q |
219 |
gtaataatgctaattggttttacttcaaattcatatgca |
257 |
Q |
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| T |
31828391 |
gtaataatgctaattggttttacttcaaattcatatgca |
31828429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 319 - 404
Target Start/End: Original strand, 31828476 - 31828561
Alignment:
| Q |
319 |
ctgaagctttcatggcccaaaactttggtcaagaaatggtttaatatcaagagtaaaaatgaagactttcaagcggatgatgatgt |
404 |
Q |
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| T |
31828476 |
ctgaagctttcatggcccaaaactttggtcaagaaatggtttaatatcaagagtaaaaatgaagactttcaagcggatgatgatgt |
31828561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 400
Target Start/End: Complemental strand, 38124325 - 38124245
Alignment:
| Q |
320 |
tgaagctttcatggcccaaaactttggtcaagaaatggtttaatatcaagagtaaaaatgaagactttcaagcggatgatg |
400 |
Q |
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| T |
38124325 |
tgaagctttcatggccaaaaacattggtcaaaaaatggttcaatatcaagaccaaatctcaagactttcaagcagatgatg |
38124245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 38124465 - 38124421
Alignment:
| Q |
157 |
tatatgaagctgtatcaacaatgagagatgataacttgaagaaaa |
201 |
Q |
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| T |
38124465 |
tatatgaagttttctcaacaatgagagatgaaaacttgaagaaaa |
38124421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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