View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20690_low_6 (Length: 239)

Name: NF20690_low_6
Description: NF20690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20690_low_6
NF20690_low_6
[»] chr6 (4 HSPs)
chr6 (41-239)||(34437733-34437931)
chr6 (70-239)||(34444480-34444649)
chr6 (1-36)||(17828687-17828722)
chr6 (1-40)||(29229025-29229064)
[»] chr3 (4 HSPs)
chr3 (1-41)||(29586253-29586293)
chr3 (1-37)||(33632743-33632779)
chr3 (8-42)||(50463438-50463472)
chr3 (1-38)||(10474557-10474594)
[»] chr2 (1 HSPs)
chr2 (1-41)||(19908696-19908736)
[»] chr7 (1 HSPs)
chr7 (1-40)||(5464022-5464061)
[»] chr5 (2 HSPs)
chr5 (1-40)||(29340914-29340953)
chr5 (1-40)||(31546403-31546442)
[»] chr1 (4 HSPs)
chr1 (4-40)||(40988775-40988811)
chr1 (1-40)||(32618717-32618756)
chr1 (3-40)||(5047501-5047538)
chr1 (3-40)||(9651955-9651992)
[»] scaffold0121 (1 HSPs)
scaffold0121 (3-40)||(29681-29718)


Alignment Details
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 41 - 239
Target Start/End: Complemental strand, 34437931 - 34437733
Alignment:
Q  41 ctagtatcatacatctttctagatgttacaacatgtcataccattgtctttggatgttggaagtacatcaagttgtcttactacataaatctccactgca 140  Q
    ||||| |||||||||||| |||||||||||||||||||||||||  ||||  |||||||||||| |||||||||||||||||||||||||||||||||||    
T  34437931 ctagtctcatacatctttttagatgttacaacatgtcataccatcttcttcagatgttggaagtgcatcaagttgtcttactacataaatctccactgca 34437832  T
Q  141 ttaagtataggttgaagcgttgaaccttcggttttttgtattgaaattcgatgttcatttgcgaccaacgacttcgaattaaacacagtgattgcttgc 239  Q
    |||||||||||| |||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34437831 ttaagtataggtggaagagttgaatcttcagttttttgtattgaaattcgatgttcatttgcgaccaacgacttcgaattaaacacagtggttgcttgc 34437733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 70 - 239
Target Start/End: Complemental strand, 34444649 - 34444480
Alignment:
Q  70 aacatgtcataccattgtctttggatgttggaagtacatcaagttgtcttactacataaatctccactgcattaagtataggttgaagcgttgaaccttc 169  Q
    ||||||||||||| |  ||||  |||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||  ||||    
T  34444649 aacatgtcataccgtcttcttcagatgttggaagtgcatcatgttgtcttactacataaatctccactgcattaagaataggtggaagcgttgagtcttc 34444550  T
Q  170 ggttttttgtattgaaattcgatgttcatttgcgaccaacgacttcgaattaaacacagtgattgcttgc 239  Q
     |||||| |||| |||||||||||||||||||| ||||||||||| ||||||||||||||| ||| ||||    
T  34444549 agtttttcgtatcgaaattcgatgttcatttgcaaccaacgactttgaattaaacacagtggttgattgc 34444480  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 17828687 - 17828722
Alignment:
Q  1 atgaaatggagagaataataaatggagaggatctta 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  17828687 atgaaatggagagaataataaatggagaggatctta 17828722  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29229064 - 29229025
Alignment:
Q  1 atgaaatggagagaataataaatggagaggatcttaactc 40  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  29229064 atgaaatcgagagaataataaatggagaggatcttaactc 29229025  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29586293 - 29586253
Alignment:
Q  1 atgaaatggagagaataataaatggagaggatcttaactcc 41  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  29586293 atgaaatggagagaataataaatggagatgatcttaactcc 29586253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 33632779 - 33632743
Alignment:
Q  1 atgaaatggagagaataataaatggagaggatcttaa 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  33632779 atgaaatggagagaataataaatggagaggatcttaa 33632743  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 50463438 - 50463472
Alignment:
Q  8 ggagagaataataaatggagaggatcttaactcct 42  Q
    |||||||||||||||||||||||||||||||||||    
T  50463438 ggagagaataataaatggagaggatcttaactcct 50463472  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10474557 - 10474594
Alignment:
Q  1 atgaaatggagagaataataaatggagaggatcttaac 38  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  10474557 atgaaatggagagaataataaatggagagaatcttaac 10474594  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 19908736 - 19908696
Alignment:
Q  1 atgaaatggagagaataataaatggagaggatcttaactcc 41  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  19908736 atgaaatgaagagaataataaatggagaggatcttaactcc 19908696  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 5464022 - 5464061
Alignment:
Q  1 atgaaatggagagaataataaatggagaggatcttaactc 40  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  5464022 atgaaatggagagaataataaatggagagaatcttaactc 5464061  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29340953 - 29340914
Alignment:
Q  1 atgaaatggagagaataataaatggagaggatcttaactc 40  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  29340953 atgaaatggagagaataataaatggagaagatcttaactc 29340914  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 31546442 - 31546403
Alignment:
Q  1 atgaaatggagagaataataaatggagaggatcttaactc 40  Q
    ||||||| |||||||||||||||||||| |||||||||||    
T  31546442 atgaaatagagagaataataaatggagatgatcttaactc 31546403  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 40988811 - 40988775
Alignment:
Q  4 aaatggagagaataataaatggagaggatcttaactc 40  Q
    |||| ||||||||||||||||||||||||||||||||    
T  40988811 aaatagagagaataataaatggagaggatcttaactc 40988775  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 32618756 - 32618717
Alignment:
Q  1 atgaaatggagagaataataaatggagaggatcttaactc 40  Q
    ||||||| ||||||||||||||||||||| ||||||||||    
T  32618756 atgaaatagagagaataataaatggagagaatcttaactc 32618717  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 5047501 - 5047538
Alignment:
Q  3 gaaatggagagaataataaatggagaggatcttaactc 40  Q
    |||||||||| | |||||||||||||||||||||||||    
T  5047501 gaaatggagatagtaataaatggagaggatcttaactc 5047538  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 9651992 - 9651955
Alignment:
Q  3 gaaatggagagaataataaatggagaggatcttaactc 40  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  9651992 gaaatggagagactaacaaatggagaggatcttaactc 9651955  T

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Target: scaffold0121 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 29681 - 29718
Alignment:
Q  3 gaaatggagagaataataaatggagaggatcttaactc 40  Q
    ||||||||||| || |||||||||||||||||||||||    
T  29681 gaaatggagaggatgataaatggagaggatcttaactc 29718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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