View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20691_high_11 (Length: 457)
Name: NF20691_high_11
Description: NF20691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20691_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 150 - 440
Target Start/End: Complemental strand, 49115407 - 49115128
Alignment:
| Q |
150 |
agattggaattgcagcagcagcagtagcaagaaaatataaatgaaattataataagcatccaatccaccgcaacatatagatagagatcaactcagctga |
249 |
Q |
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| T |
49115407 |
agattggaattgcagca---gcagtagcaagaaaatataaatgaaattataataagcatccaatccaccgcaacatatagatagagatcaactcagctga |
49115311 |
T |
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| Q |
250 |
aatctcaccaaaacgaagtccacagcaccaaaacctgaatgagagagaagttgaactaagattaagatgagtgattaatttattat-nnnnnnngaagga |
348 |
Q |
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| T |
49115310 |
aatctcaccaaaacgaagtccacagcaccaaaacctgaatgagagagaagttgaactaagattaagatgagtgattaatttattataaaaaaaagaagga |
49115211 |
T |
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| Q |
349 |
aagtaagtacctttggataataaagtcatgttgaagatagcaagtgtgaattcaacatatccggatgaatctgagtattttatttatttatt |
440 |
Q |
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| T |
49115210 |
aagtaagtacctttggataataaagtcatgttgaagatagcaagtgtgaatt---------cggatgaatctgagtattttatttatttatt |
49115128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 49115565 - 49115450
Alignment:
| Q |
7 |
gtgagatgaagcagagcagaggaaatagtaagaaggatgatgttgctttgctgttggttactactgcaaagcaaaagaaacagaaagaataggtagagat |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49115565 |
gtgacatgaagcagagcagaggaaatagtaagaaggatgatgttgctttgctgttgattactactgcaaagcaaaagaaacagaaagaataggtagagat |
49115466 |
T |
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| Q |
107 |
ccgtctctgtattgaa |
122 |
Q |
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| T |
49115465 |
ccgtctctgtattgaa |
49115450 |
T |
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