View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20691_high_13 (Length: 428)
Name: NF20691_high_13
Description: NF20691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20691_high_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 422
Target Start/End: Original strand, 4956368 - 4956772
Alignment:
| Q |
18 |
caacttcaacaccacaatattcatccttagaatcagaaagacaaaagacacttgattcatcattattgataacatcggttaaaataggcttccccaatcc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4956368 |
caacttcaacaccacaatattcatccttagaatcagaaagacaaaaggcacttgattcatcattattgataacatcggttaaaataggcttccccaatcc |
4956467 |
T |
|
| Q |
118 |
aaagtcagtttcatacacatcaaactttggtgaccctattacacgaatcatattcaaagacttgttaaactctttatcttcttttaaaggatctttcaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4956468 |
aaagtcagtttcatacacatcaaactttggtgaccctattacacgaatcatattcaaagacttgttaaactctttatcttcttttaaaggatctttcaaa |
4956567 |
T |
|
| Q |
218 |
cttatttctcttccaataatatttgctgcttcacatataccattttctcccactaacttcctctttggtagtgttgcaagacaaaatgataaacaatttc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4956568 |
cttatttctcttccaataatatttgctgcttcacatataccattttctcccactaacttcctctttggtagtgttgcaagacaaaatgataaacaatttc |
4956667 |
T |
|
| Q |
318 |
caaaatatgtggaagggattgaaagttcaaaacgattacgcaaatccattagaaatccaaaaccatgaatatcctcaaaatcatcgtctgatggagaata |
417 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
4956668 |
caaaatatgtggaaggaattgaaagttcaaaacgattacgcaaatccattagaaatccaaaaccatgaatatcctcataatcatcgtctgttggagaatt |
4956767 |
T |
|
| Q |
418 |
atcta |
422 |
Q |
| |
|
||||| |
|
|
| T |
4956768 |
atcta |
4956772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University