View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20691_high_17 (Length: 381)
Name: NF20691_high_17
Description: NF20691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20691_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 373
Target Start/End: Complemental strand, 825465 - 825105
Alignment:
| Q |
17 |
aggaataaatttatgccgattttgctgtgaccaggactaacctttcatttttgttataaa----ttaccaggtacatcaataggaaaacggtacgctaga |
112 |
Q |
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| T |
825465 |
aggaataaatttatgccgattttgctgtgaccaggactaacctttcatttttgttataaaaatgttaccaggtacatcaataggaaaacggtacgctaga |
825366 |
T |
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| Q |
113 |
acagatgaacttggtgtgccttttgctgtcactgtggattcagcaacttcagtgactatccgggagagggacaacaaggatcaagtgcgtgttgatgtgg |
212 |
Q |
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| T |
825365 |
acagatgaacttggtgtgccttttgctgtcactgtggattcaacaacttcagtgactatccgggagagggacagcaaggatcaagtgcgtgttgatgtgg |
825266 |
T |
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| Q |
213 |
aagaagctgcctctgttattagggaggtaaccgaaggccagaggacatgggaagatgtgtggtctacttttcctcatcactcttctacagctacagatga |
312 |
Q |
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| T |
825265 |
aagaagctgcctctgttattagggaggtaaccgaaggccagaggacatgggaagatgtgtggtctacttttcctcatcactcttctacagctacagatga |
825166 |
T |
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| Q |
313 |
ttgaatttaactaattcaccaatttgacctttcatggttttctgttgcaattatttctgtg |
373 |
Q |
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| T |
825165 |
ttaaatttaactaattcaccaatttgacctttcatggttttctgttgcaattatttttgtg |
825105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 77 - 268
Target Start/End: Complemental strand, 832400 - 832209
Alignment:
| Q |
77 |
ttaccaggtacatcaataggaaaacggtacgctagaacagatgaacttggtgtgccttttgctgtcactgtggattcagcaacttcagtgactatccggg |
176 |
Q |
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| T |
832400 |
ttaccaggtacatcaataggaaaacggtacgcaagaacagatgaacttggtgtgccttttgctatcactgtggattcaacaacttcagtgactatccggg |
832301 |
T |
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| Q |
177 |
agagggacaacaaggatcaagtgcgtgttgatgtggaagaagctgcctctgttattagggaggtaaccgaaggccagaggacatgggaagat |
268 |
Q |
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| T |
832300 |
agagggactgcaaggatcaagtgcgtgttgacgtggaaaatgttgccactgttattagggaggtaaccgaaggccagaggacatgggaagat |
832209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 81 - 335
Target Start/End: Complemental strand, 936932 - 936678
Alignment:
| Q |
81 |
caggtacatcaataggaaaacggtacgctagaacagatgaacttggtgtgccttttgctgtcactgtggattcagcaacttcagtgactatccgggagag |
180 |
Q |
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| T |
936932 |
caggtacatcaataggaaaacggtatgcaagaacagatgaacttggtgtgccctttgctgtaactgtagattcaacgacgtcggtgactattcgggaaag |
936833 |
T |
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| Q |
181 |
ggacaacaaggatcaagtgcgtgttgatgtggaagaagctgcctctgttattagggaggtaaccgaaggccagaggacatgggaagatgtgtggtctact |
280 |
Q |
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| T |
936832 |
ggacagcaaggatcaagtgcgtgttgatgtggaaaaagctgcctctgttataagggaggtatcagaaggccacaggacgtgggaagatgtgtggtctact |
936733 |
T |
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| Q |
281 |
tttcctcatcactcttctacagctacagatgattgaatttaactaattcaccaat |
335 |
Q |
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| T |
936732 |
tttcctcaccactcctctacaacagcagaagattgaattgaacaaattcatcaat |
936678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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