View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20691_high_2 (Length: 800)

Name: NF20691_high_2
Description: NF20691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20691_high_2
NF20691_high_2
[»] chr1 (4 HSPs)
chr1 (231-794)||(17441989-17442553)
chr1 (1-100)||(17441153-17441252)
chr1 (164-238)||(17441272-17441346)
chr1 (632-776)||(21545519-21545660)
[»] chr5 (2 HSPs)
chr5 (670-774)||(21943409-21943513)
chr5 (680-727)||(20117121-20117168)
[»] chr7 (4 HSPs)
chr7 (632-727)||(5882036-5882131)
chr7 (670-719)||(8040290-8040339)
chr7 (739-774)||(24578430-24578465)
chr7 (669-714)||(42575233-42575279)
[»] chr4 (1 HSPs)
chr4 (644-709)||(7504292-7504357)
[»] chr8 (1 HSPs)
chr8 (566-603)||(11154408-11154445)


Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 231 - 794
Target Start/End: Original strand, 17441989 - 17442553
Alignment:
Q  231 tcttacttattactgtagctttatcttactcaatctatagtaaaaccatctatttatgacttttttatatctatctacaagtcaaaaaatttatgcatta 330  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17441989 tcttatttattactgtagctttatcttactcaatctataataaaatcatctatttatgacttttttatatctatctacaagtcaaaaaatttatgcatta 17442088  T
Q  331 tagtttaatcattaaagaatccaaccaatcaattagattttgtcatcctactgatttactgattttatttaacagtttaataatccatgtggaaaaatta 430  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||    
T  17442089 tagtttaatcattaaagaatccaaccaatcaattagattttgtcatcctactaatttactgattttatttaacagttcaatgatccatgtggaaaaatta 17442188  T
Q  431 gaaaattcacagatcatgtgtaaaactaaaggaaatatatctcagctaagatatcaattccaatttagtaacgcaatgatgaattggctatta---tggt 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||   ||||    
T  17442189 gaaaattcacagatcatgtgtaaaactaaaggaaatatatctcagctaagatatcaatgccaatttagtaacgcaatgatgaattggctattatggtggt 17442288  T
Q  528 gtttcttaagcgtcctactttttgtttctttctaaaatataccatttgatcggattatataatctgaaccatgtttttgttatataataagaattgtttt 627  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  17442289 gtttcttaagcgtcctactttttgtttctttctaaaatatactatttgatcggattatataatatgaaccatgtttttgttatataataaaaattgtttt 17442388  T
Q  628 ggaattcaacaaactgcttgaaataatttcgtgtctttgcatattcaacaatttttcattatataaaataatataaaagacattgagcttatgattatat 727  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  17442389 agaattcaacaaactgcttgaaataatttcgtgtctttgcatattcaacaattttttattatataaaataatataaaagacattgagcttatgattata- 17442487  T
Q  728 ctcactaaatcattatatagttgttaatgatatacatttctactaatccactcaaggcctatgctac 794  Q
     ||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| ||||||    
T  17442488 -tcactaaatcattatatagttgttaatgatatacatttctactaacccgcttaaggcctgtgctac 17442553  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 17441153 - 17441252
Alignment:
Q  1 cttatgttatcaacatgggaggaacaagtcattatcaatagttgtttaaggtttgggtgtgtgtttatttaggtttagttttgtatatacattcttaatt 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17441153 cttatgttatcaacatgggaggaacaagtaattatcaatagttgtttaaggtttgggtgtgtgtttatttaggtttagttttgtatatacattcttaatt 17441252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 17441272 - 17441346
Alignment:
Q  164 gcactccttgtgtcttcaacattaatcctgttatataaatatacttgttttagccatatattcggtttcttactt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17441272 gcactccttgtgtcttcaacattaatcctgttatataaatatatttgttttagccatatattcggtttcttactt 17441346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 632 - 776
Target Start/End: Complemental strand, 21545660 - 21545519
Alignment:
Q  632 ttcaacaaactgcttgaaataatttcgtgtctttgcatattcaacaatttttcattatataaaataatataaaagacattgagcttatgattatatctca 731  Q
    |||||||||||||||| | ||||||| ||||| ||   ||||||||| |||||||| |||||| ||||||||||||||  |||||||| ||||||||  |    
T  21545660 ttcaacaaactgcttgcactaatttcatgtctctgtggattcaacaaattttcattgtataaa-taatataaaagacaacgagcttataattatatcaaa 21545562  T
Q  732 ctaaatcattatatagttgttaatgatatacatttctactaatcc 776  Q
     ||  ||||||| ||||||||||||||||||||||| ||||||||    
T  21545561 ata--tcattatgtagttgttaatgatatacatttcaactaatcc 21545519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 670 - 774
Target Start/End: Complemental strand, 21943513 - 21943409
Alignment:
Q  670 attcaacaatttttcattatataaaataatataaaagacattgagcttatgattatatctcactaaatcattatatagttgttaatgatatacatttcta 769  Q
    ||||||||| |||| |||||||||||||||||||||||||  ||| |||| |||||||   |  ||||||| ||||| |||||||| ||||||||||| |    
T  21943513 attcaacaaatttttattatataaaataatataaaagacaacgagtttataattatattaaaaaaaatcataatatatttgttaataatatacatttcaa 21943414  T
Q  770 ctaat 774  Q
    |||||    
T  21943413 ctaat 21943409  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 680 - 727
Target Start/End: Complemental strand, 20117168 - 20117121
Alignment:
Q  680 ttttcattatataaaataatataaaagacattgagcttatgattatat 727  Q
    |||||| ||||||||||||||||||||| |||||| |||| |||||||    
T  20117168 ttttcaatatataaaataatataaaagagattgaggttataattatat 20117121  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 632 - 727
Target Start/End: Original strand, 5882036 - 5882131
Alignment:
Q  632 ttcaacaaactgcttgaaataatttcgtgtctttgcatattcaacaatttttcattatataaaataatataaaagacattgagcttatgattatat 727  Q
    ||||||| |||||||| | | ||||| | ||||||   ||||||||| ||||||||||| ||||||||| |||||||| ||||| ||| |||||||    
T  5882036 ttcaacatactgcttgcactgatttcatatctttgtggattcaacaaattttcattatacaaaataatacaaaagacaatgagcatataattatat 5882131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 670 - 719
Target Start/End: Complemental strand, 8040339 - 8040290
Alignment:
Q  670 attcaacaatttttcattatataaaataatataaaagacattgagcttat 719  Q
    |||||||||||||| | ||| ||||||||||||||||||| |||||||||    
T  8040339 attcaacaatttttaaatatgtaaaataatataaaagacaatgagcttat 8040290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 739 - 774
Target Start/End: Original strand, 24578430 - 24578465
Alignment:
Q  739 attatatagttgttaatgatatacatttctactaat 774  Q
    ||||||||||||||||||||||||||||| ||||||    
T  24578430 attatatagttgttaatgatatacatttcaactaat 24578465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 669 - 714
Target Start/End: Complemental strand, 42575279 - 42575233
Alignment:
Q  669 tattcaacaatttttcatta-tataaaataatataaaagacattgag 714  Q
    ||||||||||||||||| || ||||||||||||||||||||| ||||    
T  42575279 tattcaacaatttttcaataatataaaataatataaaagacaatgag 42575233  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 644 - 709
Target Start/End: Original strand, 7504292 - 7504357
Alignment:
Q  644 cttgaaataatttcgtgtctttgcatattcaacaatttttcattatataaaataatataaaagaca 709  Q
    |||||||| ||||| ||||||||   ||| ||||| |||||||||||||||||| |||||||||||    
T  7504292 cttgaaatgatttcatgtctttgtggatttaacaaattttcattatataaaatagtataaaagaca 7504357  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 603
Target Start/End: Complemental strand, 11154445 - 11154408
Alignment:
Q  566 ataccatttgatcggattatataatctgaaccatgttt 603  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  11154445 ataccatttgctcggattatagaatctgaaccatgttt 11154408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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