View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20691_high_21 (Length: 313)

Name: NF20691_high_21
Description: NF20691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20691_high_21
NF20691_high_21
[»] chr4 (5 HSPs)
chr4 (146-301)||(14134893-14135049)
chr4 (12-51)||(14134758-14134797)
chr4 (152-199)||(2548975-2549022)
chr4 (162-199)||(50328495-50328532)
chr4 (156-204)||(38354249-38354297)
[»] chr1 (1 HSPs)
chr1 (251-294)||(46713108-46713151)
[»] chr3 (3 HSPs)
chr3 (152-198)||(54362015-54362061)
chr3 (268-300)||(36881133-36881165)
chr3 (153-201)||(53683919-53683967)
[»] chr8 (3 HSPs)
chr8 (271-300)||(3760629-3760658)
chr8 (152-200)||(5957110-5957158)
chr8 (162-198)||(25186140-25186176)
[»] chr5 (1 HSPs)
chr5 (267-300)||(6075214-6075247)
[»] chr2 (1 HSPs)
chr2 (240-297)||(36168676-36168733)
[»] chr6 (2 HSPs)
chr6 (165-193)||(7763802-7763830)
chr6 (162-198)||(31038234-31038270)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 146 - 301
Target Start/End: Original strand, 14134893 - 14135049
Alignment:
Q  146 tatgtatacttttgactcattaacttataccttaaggacacaagttaatatttttcaattttcaattgatgtcataatttca-nnnnnnnnaagaaatgt 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||    
T  14134893 tatgtatacttttgactcattaacttataccttaaggacacaagttaatatttttcaattttcaattgatgtcataatttcatttttttttaagaaatgt 14134992  T
Q  245 cataatttctaaaaaggtatgtatttatatcatttatttatttcaaaactatagtat 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14134993 cataatttctaaaaaggtatgtatttatatcatttatttatttcaaaactatagtat 14135049  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 14134758 - 14134797
Alignment:
Q  12 atattaacagagttataaaattgtgtccttataacatatg 51  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14134758 atattaacagagttataaaattgtgtccttataacatatg 14134797  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 2549022 - 2548975
Alignment:
Q  152 tacttttgactcattaacttataccttaaggacacaagttaatatttt 199  Q
    ||||||||| |||||||||| | ||||||||||||||||||| |||||    
T  2549022 tacttttgattcattaacttgttccttaaggacacaagttaacatttt 2548975  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 50328495 - 50328532
Alignment:
Q  162 tcattaacttataccttaaggacacaagttaatatttt 199  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  50328495 tcattaacttgtaccttaaggacacaagttaacatttt 50328532  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 38354297 - 38354249
Alignment:
Q  156 tttgactcattaacttataccttaaggacacaagttaatatttttcaat 204  Q
    ||||| |||||||||| || |||||||||||||||||| |||| |||||    
T  38354297 tttgattcattaacttgtatcttaaggacacaagttaacatttctcaat 38354249  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 46713108 - 46713151
Alignment:
Q  251 ttctaaaaaggtatgtatttatatcatttatttatttcaaaact 294  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||    
T  46713108 ttctagaaatgtatgtatttatatcatttatttatttcaaaact 46713151  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 54362061 - 54362015
Alignment:
Q  152 tacttttgactcattaacttataccttaaggacacaagttaatattt 198  Q
    |||||||||||||||||||| | |||||||| |||||||||| ||||    
T  54362061 tacttttgactcattaacttgtgccttaagggcacaagttaacattt 54362015  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 300
Target Start/End: Original strand, 36881133 - 36881165
Alignment:
Q  268 tttatatcatttatttatttcaaaactatagta 300  Q
    ||||||||||||||||| |||||||||||||||    
T  36881133 tttatatcatttatttacttcaaaactatagta 36881165  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 53683967 - 53683919
Alignment:
Q  153 acttttgactcattaacttataccttaaggacacaagttaatatttttc 201  Q
    ||||||| ||||||||||| | |||||||| |||||||||| |||||||    
T  53683967 acttttggctcattaacttgtgccttaagggcacaagttaacatttttc 53683919  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 300
Target Start/End: Complemental strand, 3760658 - 3760629
Alignment:
Q  271 atatcatttatttatttcaaaactatagta 300  Q
    ||||||||||||||||||||||||||||||    
T  3760658 atatcatttatttatttcaaaactatagta 3760629  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 5957110 - 5957158
Alignment:
Q  152 tacttttgactcattaacttataccttaaggacacaagttaatattttt 200  Q
    |||| |||| |||||||||| ||||||||| ||||||||||| ||||||    
T  5957110 tactattgattcattaacttgtaccttaagaacacaagttaacattttt 5957158  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 25186176 - 25186140
Alignment:
Q  162 tcattaacttataccttaaggacacaagttaatattt 198  Q
    |||||||||| |||||||||| |||||||||||||||    
T  25186176 tcattaacttgtaccttaagggcacaagttaatattt 25186140  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 300
Target Start/End: Complemental strand, 6075247 - 6075214
Alignment:
Q  267 atttatatcatttatttatttcaaaactatagta 300  Q
    ||||||||||||||||||||| ||||||||||||    
T  6075247 atttatatcatttatttattttaaaactatagta 6075214  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 36168733 - 36168676
Alignment:
Q  240 aatgtcataatttctaaaaaggtatgtatttatatcatttatttatttcaaaactata 297  Q
    |||||||| | || ||||||  |||| |||||||||||||||||||| ||||||||||    
T  36168733 aatgtcatcaattttaaaaatatatgcatttatatcatttatttattccaaaactata 36168676  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 193
Target Start/End: Complemental strand, 7763830 - 7763802
Alignment:
Q  165 ttaacttataccttaaggacacaagttaa 193  Q
    |||||||||||||||||||||||||||||    
T  7763830 ttaacttataccttaaggacacaagttaa 7763802  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 31038270 - 31038234
Alignment:
Q  162 tcattaacttataccttaaggacacaagttaatattt 198  Q
    |||||||||| |||||||| |||||||||||||||||    
T  31038270 tcattaacttctaccttaaagacacaagttaatattt 31038234  T

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