View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20691_high_28 (Length: 248)
Name: NF20691_high_28
Description: NF20691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20691_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 12 - 234
Target Start/End: Original strand, 37442882 - 37443104
Alignment:
| Q |
12 |
gtataaagtactagggtttgtggtagcaataagtaaatatttggtggaccatataattcgttcaacatatataatgtacaaatgagatgaattgtgcacc |
111 |
Q |
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| T |
37442882 |
gtataaagtactagggtttgtggtagcaataagtaaatatttggtggaccatataatttgttcaacatatataatgtacaaatgagatgaattgtgcacc |
37442981 |
T |
|
| Q |
112 |
atggttctgctaaaaacttttcaacctacatcaacacttttaatcatgaagctaagaatcaaatgtcctcgccgtctagtcttgtatattaatttctcta |
211 |
Q |
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| T |
37442982 |
atggttctgctaaaaacttttcaacctacatcaacacttttaatcatgaagctaaaaatcaaatgtcctcgccgtctagtcttgtatattaatttctcta |
37443081 |
T |
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| Q |
212 |
tcgtgattatgattcaggcccca |
234 |
Q |
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|||| |||||||||||||||||| |
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| T |
37443082 |
tcgtaattatgattcaggcccca |
37443104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 234
Target Start/End: Original strand, 34941322 - 34941424
Alignment:
| Q |
129 |
ttttcaacctacatcaacacttttaatcatgaagctaagaatcaaatgtcctc-gccgtctagtcttgtatattaatttctctatcgtgattatgattca |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||| ||| | |||||||||||| | |
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| T |
34941322 |
ttttcaacctacatcaacacttttaatcatgaagctaagaatcaaatgtcctcagcagtctagtc----gtattaatttttctttggtgattatgattta |
34941417 |
T |
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| Q |
228 |
ggcccca |
234 |
Q |
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||||||| |
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| T |
34941418 |
ggcccca |
34941424 |
T |
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