View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20691_high_30 (Length: 237)
Name: NF20691_high_30
Description: NF20691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20691_high_30 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 37442672 - 37442893
Alignment:
| Q |
18 |
tatagaagatatgaattatgtgatgatcttgaatataatctaatagtgtttgctgtcttaattatgtgatgatacgaatatattagtagttctttataaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37442672 |
tatagaagatatgaattatgtgatgatcttgaatatattctaatagtgtttgctgtcttaattatgtgatgatatgaatatattagtagttctttataaa |
37442771 |
T |
|
| Q |
118 |
atg---tgaannnnnnngactgatgatgtggatattgttgaatagctagtttggtacgtatatatatacacctcatctattttctattgttcaatagtaa |
214 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37442772 |
atgttctgaatttttttgactgatgatgtggatattgttgaatagctagtttggtacgtatatatatacacctcatctattttctattgttcaatagtaa |
37442871 |
T |
|
| Q |
215 |
tcctctcctttgtataaagtact |
237 |
Q |
| |
|
|||||||| | |||||||||||| |
|
|
| T |
37442872 |
tcctctcc-tcgtataaagtact |
37442893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University