View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20691_high_33 (Length: 216)
Name: NF20691_high_33
Description: NF20691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20691_high_33 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 30274139 - 30274319
Alignment:
| Q |
20 |
atgtttccagctgcatcagaatacaattttctgatatttgcttctctccagtcatgtaacagctgccttgctcgaactgtaatggcctggcacgtctctg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30274139 |
atgtttccagctgcatcagaatacaattttctgatatttgcttctctccagtcatgtaacagctgccttgctcgaactgtaatggcctggcacatctctg |
30274238 |
T |
|
| Q |
120 |
aaatgttctgccaaactcttagattctgactcttccataagcaccgtaaattcatagcaaactattcggctttctcctttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30274239 |
aaatgttctgccaaactcttagattctgactcttccataaccaccgtaaattcatagcaaactattcggctttctcctttg |
30274319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 198
Target Start/End: Original strand, 27040291 - 27040436
Alignment:
| Q |
53 |
atatttgcttctctccagtcatgtaacagctgccttgctcgaactgtaatggcctggcacgtctctgaaatgttctgccaaactcttagattctgactct |
152 |
Q |
| |
|
||||||||||||||||| ||| ||||| ||| ||||||| | | ||| |||||||| || |||||||| |||||||| | || |||||| |||||| |
|
|
| T |
27040291 |
atatttgcttctctccactcaactaacatctgttgtgctcgagcagaaatagcctggcatgtttctgaaatattctgccatattcgaagattccgactct |
27040390 |
T |
|
| Q |
153 |
tccataagcaccgtaaattcatagcaaactattcggctttctcctt |
198 |
Q |
| |
|
||||||| | || ||||||||| ||||||| |||| ||||||||| |
|
|
| T |
27040391 |
tccataaactccataaattcatcgcaaactgttcgaatttctcctt |
27040436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 14150894 - 14150974
Alignment:
| Q |
116 |
tctgaaatgttctgccaaactcttagattctgactcttccataagcaccgtaaattcatagcaaactattcggctttctcc |
196 |
Q |
| |
|
|||||||| |||| ||| |||| || ||| ||||||||||||| | || ||||||||||||||||| || ||||||||| |
|
|
| T |
14150894 |
tctgaaatattctcccatactcgtaagttccgactcttccataaactccataaattcatagcaaactgctcagctttctcc |
14150974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University