View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20691_high_6 (Length: 558)

Name: NF20691_high_6
Description: NF20691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20691_high_6
NF20691_high_6
[»] chr7 (26 HSPs)
chr7 (1-542)||(20279550-20280079)
chr7 (131-542)||(20303868-20304286)
chr7 (131-542)||(20062052-20062458)
chr7 (1-251)||(20273846-20274096)
chr7 (131-291)||(20289421-20289581)
chr7 (131-291)||(20294827-20294987)
chr7 (131-298)||(20167812-20167979)
chr7 (90-288)||(20285069-20285265)
chr7 (133-291)||(20243801-20243959)
chr7 (133-291)||(20264188-20264346)
chr7 (142-291)||(20231738-20231887)
chr7 (382-538)||(20004860-20005016)
chr7 (126-255)||(19939297-19939426)
chr7 (126-255)||(19970436-19970565)
chr7 (126-290)||(20005104-20005268)
chr7 (379-506)||(20231986-20232113)
chr7 (379-506)||(20244055-20244182)
chr7 (379-506)||(20248093-20248220)
chr7 (376-542)||(20289679-20289845)
chr7 (1-69)||(20303729-20303797)
chr7 (379-506)||(20264444-20264571)
chr7 (384-506)||(20167604-20167726)
chr7 (379-538)||(20274220-20274379)
chr7 (379-506)||(20295069-20295196)
chr7 (1-75)||(20168035-20168109)
chr7 (1-69)||(20284980-20285048)
[»] chr4 (5 HSPs)
chr4 (139-291)||(40823570-40823722)
chr4 (376-443)||(40823398-40823465)
chr4 (131-169)||(36419609-36419647)
chr4 (181-221)||(31708590-31708630)
chr4 (131-207)||(36366668-36366744)
[»] chr8 (6 HSPs)
chr8 (131-209)||(4159639-4159717)
chr8 (133-290)||(4130194-4130351)
chr8 (131-191)||(4142638-4142698)
chr8 (131-290)||(4120113-4120272)
chr8 (133-203)||(23189886-23189956)
chr8 (131-203)||(4150644-4150716)
[»] chr2 (7 HSPs)
chr2 (131-210)||(2704305-2704384)
chr2 (131-210)||(2711955-2712034)
chr2 (131-210)||(2716872-2716951)
chr2 (131-210)||(2723495-2723574)
chr2 (131-210)||(2745325-2745404)
chr2 (132-224)||(2681800-2681892)
chr2 (131-221)||(2698270-2698360)
[»] chr5 (2 HSPs)
chr5 (132-203)||(453819-453890)
chr5 (133-191)||(469788-469846)
[»] chr1 (3 HSPs)
chr1 (132-203)||(47627662-47627733)
chr1 (166-240)||(21936676-21936750)
chr1 (142-206)||(47593646-47593710)
[»] chr3 (2 HSPs)
chr3 (131-224)||(3103478-3103571)
chr3 (131-230)||(5829873-5829972)


Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Original strand, 20279550 - 20280079
Alignment:
Q  1 tatggctagaatctttggagggggagacaatcaggtcaatacttccagaattgtcggaacatagtaagtgtgcctgccaaaatttttactttagtagtaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  20279550 tatggctagaatctttggagggggagacaatcaggtcaatacttccagaattgtcggaacatagtaagtgtgcctgccaaaacttttactttagcagtaa 20279649  T
Q  101 taactggagaataaaattttacttgtcaacgcagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctt 200  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||            ||||||||||||||||||||||||||||||||||||||||||    
T  20279650 taactggagaataaacttttacttgtcaacgcagtggctatttgtc------------aatgcaaggacttttttcagagaaatcagatgtttttagctt 20279737  T
Q  201 tggtgttttggtactagagatcattagcgggagaagaaacccaagcttttatgacaatgagcatgctctgagtcttgtaggatttgtaagcattaacagt 300  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20279738 tggtgttttggtactagagatcgttagcgggagaagaaactcaagcttttatgacaatgagcatgctctgagtcttgtaggatttgtaagcattaacagt 20279837  T
Q  301 tcattactggctcaataatatgctattttttccttttgctgccgcaacttacaaatatttgaaatttgcttttgcttttcatttaggtttggatacaatg 400  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20279838 tcattactggctcaataatatgctattttttccttttgctaccgcaacttacaaatatttgaaatttgcttttgcttttcatttaggtctggatacaatg 20279937  T
Q  401 gagggaaggaaatattttatctttaatagaaccagaaatatatattcatagttatcatgagaatattttgagatgcatacatataggacttttatgtgta 500  Q
    |||||||||||||||||||||||||||||| ||||||||||||  ||||||| || || ||||||||| ||||||| ||||||||||||| |||||||||    
T  20279938 gagggaaggaaatattttatctttaatagatccagaaatatatgatcatagtcatgataagaatatttcgagatgcttacatataggactgttatgtgta 20280037  T
Q  501 caagaatcagctatagacagacctaccatggctgcagtaatt 542  Q
    |||||||| ||| ||||||| ||||  |||||| ||||||||    
T  20280038 caagaatcggctgtagacaggcctaatatggctacagtaatt 20280079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 131 - 542
Target Start/End: Original strand, 20303868 - 20304286
Alignment:
Q  131 gcagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttggtactagagatcattagcgg 230  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| |||| ||    
T  20303868 gcagtggctatatgtctcctgaatacgcaatgcgaggacttttttcagagaaatcagatgtttttagctttggtgtattgattctagagatcgttagtgg 20303967  T
Q  231 gagaagaaacccaagcttttatgacaatgagcatgctctgagtcttgtaggatttgtaagcattaacagttcattactggctcaataatatgctattttt 330  Q
    |||||||||| ||||||||||||||||||||||||| | ||||||| |||||||||||||  ||||||||||  |  || || ||||| |  || |||||    
T  20303968 gagaagaaactcaagcttttatgacaatgagcatgcaccgagtcttctaggatttgtaagacttaacagttcgattttgacttaataacactctcttttt 20304067  T
Q  331 t--ccttttgctgc---cgcaacttacaaatatttgaaatttg--cttttgcttttcatttaggtttggatacaatggagggaaggaaatattttatctt 423  Q
    |  | | |||||||    ||||||||||||||| ||||| |||   |||| |||||||||||||| ||||||||||||||||||| |||||| |||||||    
T  20304068 ttgcttattgctgctgatgcaacttacaaatatctgaaacttgatttttttcttttcatttaggtctggatacaatggagggaagaaaatatgttatctt 20304167  T
Q  424 taatagaaccagaaatatatattcatagttatcatgagaatattttgagatgcatacatataggacttttatgtgtacaagaatcagctatagacagacc 523  Q
    ||||||| ||||||||||||  ||||||| ||||    ||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||    
T  20304168 taatagatccagaaatatatgatcatagtcatcacaccaatatattgagatgcatacatataggactgttatgtgtacaagaatcagctgtagatagacc 20304267  T
Q  524 taccatggctgcagtaatt 542  Q
    ||| |||||  ||||||||    
T  20304268 tactatggcgacagtaatt 20304286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 131 - 542
Target Start/End: Complemental strand, 20062458 - 20062052
Alignment:
Q  131 gcagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttggtactagagatcattagcgg 230  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||  |||  ||    
T  20062458 gcagtggttatatgtctcctgaatacgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttgatacttgagattcttactgg 20062359  T
Q  231 gagaagaaacccaagcttttatgacaatgagcatgctctgagtcttgtaggatttgtaagcattaacagttcattactggctcaataatatgctattttt 330  Q
    |||||||||| ||||||||||||||||||||    |||||| |||| |||||||||||||| || | |||| |||  |  |||||||| |  ||  ||||    
T  20062358 gagaagaaactcaagcttttatgacaatgag---actctgactcttttaggatttgtaagcctttatagttaattttttactcaataaca--ctcctttt 20062264  T
Q  331 tccttttgctgccgcaacttacaaatatttgaaatttgcttttgcttttcatttaggtttggatacaatggagggaaggaaatattttatctttaataga 430  Q
    |||||||||||  | || ||||  |||| |||||  ||  | ||||||| |||||||| ||| ||||||||||||||| |||||||||||| ||||||||    
T  20062263 tccttttgctgatgaaaattaccgatatatgaaacatgtgtatgctttttatttaggtatggttacaatggagggaagaaaatattttatccttaataga 20062164  T
Q  431 accagaaatatatattcatagttatcatgagaatattttgagatgcatacatataggacttttatgtgtacaagaatcagctatagacagacctaccatg 530  Q
      |||||||||||  ||||||| ||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| ||  ||||||| ||||  |||    
T  20062163 tacagaaatatatgatcatagtcatcataagaatatttcgagatgcatacatataggactgttatgtgtacaagaatcggccgtagacaggcctaatatg 20062064  T
Q  531 gctgcagtaatt 542  Q
    ||| ||||||||    
T  20062063 gctacagtaatt 20062052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 20273846 - 20274096
Alignment:
Q  1 tatggctagaatctttggagggggagacaatcaggtcaatacttccagaattgtcggaacatagtaagtgtgcctgccaaaatttttactttagtagtaa 100  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||    
T  20273846 tatggctagaatctttggagggggagacgatcaggtcaatacctccagaattgttggaacttagtaagtgtgcctgccaaaacttttactttagcagtaa 20273945  T
Q  101 taactggagaataaaattttacttgtcaacgcagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctt 200  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||  ||||||||||||||||    
T  20273946 taactgaagaataaacttttacttgtcaacgcagtggctatatgtctcctgaatatgcaatgcaaggattattttccgagaagacagatgtttttagctt 20274045  T
Q  201 tggtgttttggtactagagatcattagcgggagaagaaacccaagctttta 251  Q
    |||||||||| | ||||||||  ||| ||||| ||||||| |||| |||||    
T  20274046 tggtgttttgatcctagagattcttaccgggaaaagaaactcaagttttta 20274096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 131 - 291
Target Start/End: Original strand, 20289421 - 20289581
Alignment:
Q  131 gcagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttggtactagagatcattagcgg 230  Q
    ||||||| ||||| ||||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||    
T  20289421 gcagtggttatatatctcccgaatacgcaatgcaaggactgttttcagagaaatcagatgtctttagctttggtgttttgttactagagattattagcgg 20289520  T
Q  231 gagaagaaacccaagcttttatgacaatgagcatgctctgagtcttgtaggatttgtaagc 291  Q
    |||||||||| ||||||||||||||||||||||||| ||||  ||| ||||||||||||||    
T  20289521 gagaagaaactcaagcttttatgacaatgagcatgcactgacccttttaggatttgtaagc 20289581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 131 - 291
Target Start/End: Original strand, 20294827 - 20294987
Alignment:
Q  131 gcagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttggtactagagatcattagcgg 230  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| | ||||||||  ||| |||    
T  20294827 gcagtggctatatgtctcctgaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgttttgatgctagagattgttaccgg 20294926  T
Q  231 gagaagaaacccaagcttttatgacaatgagcatgctctgagtcttgtaggatttgtaagc 291  Q
    |||||| ||| |||  |||||||||  |||| || ||||||  ||| ||||||||||||||    
T  20294927 gagaaggaactcaattttttatgactttgagaattctctgacccttataggatttgtaagc 20294987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 131 - 298
Target Start/End: Complemental strand, 20167979 - 20167812
Alignment:
Q  131 gcagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttggtactagagatcattagcgg 230  Q
    ||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| || |||||||  ||| |||    
T  20167979 gcagtggctatatgtctcccgagtatgcaatgcaaggactattttcagagaaatcagatgtgtttagctttggtgttttgatattagagattgttaccgg 20167880  T
Q  231 gagaagaaacccaagcttttatgacaatgagcatgctctgagtcttgtaggatttgtaagcattaaca 298  Q
    |||||| ||| |||| ||||| || ||||| ||||||||||| ||| | |||| ||||||| ||||||    
T  20167879 gagaaggaactcaagtttttacgaaaatgaacatgctctgagccttttgggatatgtaagccttaaca 20167812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 90 - 288
Target Start/End: Original strand, 20285069 - 20285265
Alignment:
Q  90 tttagtagtaataactggagaataaaattttacttgtcaacgcagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagat 189  Q
    |||||||||||||| |  |||||||  |||||  | | || ||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||    
T  20285069 tttagtagtaataattaaagaataattttttatattttaatgcagtggctatatgtctccggaatatgcaatgcaaggattattttcagagaaatcagat 20285168  T
Q  190 gtttttagctttggtgttttggtactagagatcattagcgggagaagaaacccaagcttttatgacaatgagcatgctctgagtcttgtaggatttgta 288  Q
     ||||||| |||||||||||| ||||||||||  |||  |||||||| ||| || | ||||||||||||||||||  |||||| ||| |||||||||||    
T  20285169 ttttttagttttggtgttttgatactagagattgttactgggagaaggaactcatgtttttatgacaatgagcat--tctgagccttttaggatttgta 20285265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 133 - 291
Target Start/End: Original strand, 20243801 - 20243959
Alignment:
Q  133 agtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttggtactagagatcattagcggga 232  Q
    |||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||| ||||||||||  ||| ||| |    
T  20243801 agtggctacatgtctcctgaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgtattgctactagagattgttatcggaa 20243900  T
Q  233 gaagaaacccaagcttttatgacaatgagcatgctctgagtcttgtaggatttgtaagc 291  Q
    |||||||| |||| ||||||||  ||||||||  ||| || ||| |||||| |||||||    
T  20243901 gaagaaactcaagtttttatgatgatgagcataatcttagccttttaggatatgtaagc 20243959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 133 - 291
Target Start/End: Original strand, 20264188 - 20264346
Alignment:
Q  133 agtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttggtactagagatcattagcggga 232  Q
    ||||| || |||||||| |||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| ||| ||||||||||  ||| |||||    
T  20264188 agtggttacatgtctcccgaatatgcaatgcaaggattattttcagagaagtcagatgtttttagctttggtgtattgctactagagattgttatcggga 20264287  T
Q  233 gaagaaacccaagcttttatgacaatgagcatgctctgagtcttgtaggatttgtaagc 291  Q
    |||||||| |||| ||||||||  ||||||||  ||| |||||| ||||||||||||||    
T  20264288 gaagaaactcaagtttttatgatgatgagcataatcttagtcttttaggatttgtaagc 20264346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 142 - 291
Target Start/End: Original strand, 20231738 - 20231887
Alignment:
Q  142 atgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttggtactagagatcattagcgggagaagaaacc 241  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||| ||||||||||  ||| ||| |||||||||     
T  20231738 atgtctcctgaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgtattgctactagagattgttatcggaagaagaaact 20231837  T
Q  242 caagcttttatgacaatgagcatgctctgagtcttgtaggatttgtaagc 291  Q
    |||| ||||||||| ||| ||||  |||||| ||| |||||| |||||||    
T  20231838 caagtttttatgacgatgtgcataatctgagccttttaggatatgtaagc 20231887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 382 - 538
Target Start/End: Complemental strand, 20005016 - 20004860
Alignment:
Q  382 tttaggtttggatacaatggagggaaggaaatattttatctttaatagaaccagaaatatatattcatagttatcatgagaatattttgagatgcataca 481  Q
    |||||| |||||| ||||||| |||||  |||||||||||||| ||||||||||||||||||  ||||||| |||||  || ||||| ||||||||||||    
T  20005016 tttaggcttggattcaatggaaggaagacaatattttatctttgatagaaccagaaatatatgatcatagtcatcataggagtatttcgagatgcataca 20004917  T
Q  482 tataggacttttatgtgtacaagaatcagctatagacagacctaccatggctgcagt 538  Q
    ||||||||| |||||||||||||||||||||   |||||||| || |||||||||||    
T  20004916 tataggactgttatgtgtacaagaatcagctgcggacagaccaactatggctgcagt 20004860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 126 - 255
Target Start/End: Original strand, 19939297 - 19939426
Alignment:
Q  126 tcaacgcagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttggtactagagatcatt 225  Q
    |||| ||||||| ||||||||||| |||||||||||||||||||| ||||| || ||||| ||||| ||||||||||| |||||  | || ||||| |||    
T  19939297 tcaatgcagtggttatatgtctccagaatatgcaatgcaaggactgttttctgataaatctgatgtctttagctttggagttttacttcttgagattatt 19939396  T
Q  226 agcgggagaagaaacccaagcttttatgac 255  Q
    || || ||||||||  ||||||||||||||    
T  19939397 agtggaagaagaaattcaagcttttatgac 19939426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 126 - 255
Target Start/End: Original strand, 19970436 - 19970565
Alignment:
Q  126 tcaacgcagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttggtactagagatcatt 225  Q
    |||| ||||||| ||||||||||| |||||||||||||||||||| ||||| || ||||| ||||| ||||||||||| |||||  | || ||||| |||    
T  19970436 tcaatgcagtggttatatgtctccagaatatgcaatgcaaggactgttttctgataaatctgatgtctttagctttggagttttacttcttgagattatt 19970535  T
Q  226 agcgggagaagaaacccaagcttttatgac 255  Q
    || || ||||||||  ||||||||||||||    
T  19970536 agtggaagaagaaattcaagcttttatgac 19970565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 126 - 290
Target Start/End: Complemental strand, 20005268 - 20005104
Alignment:
Q  126 tcaacgcagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttggtactagagatcatt 225  Q
    |||| ||||||| |||||| |||| || ||||||||||||||| | ||||| || |||||||| || || |||||||| |||||| || |||||||  ||    
T  20005268 tcaatgcagtggttatatggctccagagtatgcaatgcaaggagtattttcggataaatcagacgtcttcagctttggagttttgctaatagagattgtt 20005169  T
Q  226 agcgggagaagaaacccaagcttttatgacaatgagcatgctctgagtcttgtaggatttgtaag 290  Q
    || || ||| ||||| |||||||||||||  ||||  || |||||| |||  |||||||||||||    
T  20005168 agtggaagacgaaactcaagcttttatgaacatgaaaattctctgactctcttaggatttgtaag 20005104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 379 - 506
Target Start/End: Original strand, 20231986 - 20232113
Alignment:
Q  379 tcatttaggtttggatacaatggagggaaggaaatattttatctttaatagaaccagaaatatatattcatagttatcatgagaatattttgagatgcat 478  Q
    |||||||||| |||| ||||||||| ||||  |||||||| ||| ||||||| | ||||||||||  ||||||| ||||| |  ||||||  || |||||    
T  20231986 tcatttaggtatggacacaatggagtgaagacaatattttgtctctaatagatcaagaaatatatgatcatagtcatcataattatatttcaaggtgcat 20232085  T
Q  479 acatataggacttttatgtgtacaagaa 506  Q
    |||||||||||| || |||| |||||||    
T  20232086 acatataggactattgtgtgcacaagaa 20232113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 379 - 506
Target Start/End: Original strand, 20244055 - 20244182
Alignment:
Q  379 tcatttaggtttggatacaatggagggaaggaaatattttatctttaatagaaccagaaatatatattcatagttatcatgagaatattttgagatgcat 478  Q
    |||||||||| |||| ||||||||| ||||  |||||||| ||| ||||||| | ||||||||||  ||||||| ||||| |  ||||||  || |||||    
T  20244055 tcatttaggtatggacacaatggagtgaagacaatattttgtctctaatagatcaagaaatatatgatcatagtcatcataattatatttcaaggtgcat 20244154  T
Q  479 acatataggacttttatgtgtacaagaa 506  Q
    |||||||||||| || |||| |||||||    
T  20244155 acatataggactattgtgtgcacaagaa 20244182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 379 - 506
Target Start/End: Original strand, 20248093 - 20248220
Alignment:
Q  379 tcatttaggtttggatacaatggagggaaggaaatattttatctttaatagaaccagaaatatatattcatagttatcatgagaatattttgagatgcat 478  Q
    |||||||||| |||| ||||||||| ||||  |||||||| ||| ||||||| | ||||||||||  ||||||| ||||| |  ||||||  || |||||    
T  20248093 tcatttaggtatggacacaatggagtgaagacaatattttgtctctaatagatcaagaaatatatgatcatagtcatcataattatatttcaaggtgcat 20248192  T
Q  479 acatataggacttttatgtgtacaagaa 506  Q
    |||||||||||| || |||| |||||||    
T  20248193 acatataggactattgtgtgcacaagaa 20248220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 376 - 542
Target Start/End: Original strand, 20289679 - 20289845
Alignment:
Q  376 ttttcatttaggtttggatacaatggagggaaggaaatattttatctttaatagaaccagaaatatatattcatagttatcatgagaatattttgagatg 475  Q
    ||||||| ||||||||||||||||||| |||||| |||||||||||||| ||| |  |||||||||||  || |||| | ||| || || || | || ||    
T  20289679 ttttcatctaggtttggatacaatggaaggaaggcaatattttatcttttataaatacagaaatatatgatcctagtcaccataagtatgttgtaaggtg 20289778  T
Q  476 catacatataggacttttatgtgtacaagaatcagctatagacagacctaccatggctgcagtaatt 542  Q
     ||||| || |||||| | |||||||||||    ||| ||||||| ||||  |||||||||||||||    
T  20289779 tatacacattggacttctgtgtgtacaagagcttgctgtagacaggcctaatatggctgcagtaatt 20289845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 20303729 - 20303797
Alignment:
Q  1 tatggctagaatctttggagggggagacaatcaggtcaatacttccagaattgtcggaacatagtaagt 69  Q
    |||||||||||||||||||||| |||| ||||||| ||||||| ||||  |||||||||| ||||||||    
T  20303729 tatggctagaatctttggagggagagaaaatcaggccaatactaccagggttgtcggaacttagtaagt 20303797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 506
Target Start/End: Original strand, 20264444 - 20264571
Alignment:
Q  379 tcatttaggtttggatacaatggagggaaggaaatattttatctttaatagaaccagaaatatatattcatagttatcatgagaatattttgagatgcat 478  Q
    |||||||||| |||| ||||||||| ||||  |||||||| ||| ||||||| | ||||||||||  ||||||| ||||| |  ||||||  || |||||    
T  20264444 tcatttaggtatggacacaatggagtgaagacaatattttgtctctaatagatcaagaaatatatgatcatagtcatcataattatatttcaaggtgcat 20264543  T
Q  479 acatataggacttttatgtgtacaagaa 506  Q
    |||||| ||||| || |||| |||||||    
T  20264544 acatattggactattgtgtgcacaagaa 20264571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 384 - 506
Target Start/End: Complemental strand, 20167726 - 20167604
Alignment:
Q  384 taggtttggatacaatggagggaaggaaatattttatctttaatagaaccagaaatatatattcatagttatcatgagaatattttgagatgcatacata 483  Q
    ||||| |||||||||||||||||||  || ||||||||| ||||||| | || |||||||  || |||| ||||| |  ||||||  || ||||||||||    
T  20167726 taggtatggatacaatggagggaagacaacattttatctctaatagatcaaggaatatatgatcctagtcatcataattatatttcaaggtgcatacata 20167627  T
Q  484 taggacttttatgtgtacaagaa 506  Q
    ||||||| || |||| |||||||    
T  20167626 taggactattgtgtgcacaagaa 20167604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 538
Target Start/End: Original strand, 20274220 - 20274379
Alignment:
Q  379 tcatttaggtttggatacaatggagggaaggaaatattttatctttaatagaaccagaaatatatattcatagttatcatgagaatattttgagatgcat 478  Q
    |||||||||| ||||| |||||||||||||  ||||| |||||| ||||||| | || |||| ||  || |||| ||||| |  | ||||| || | |||    
T  20274220 tcatttaggtatggatccaatggagggaagacaatatcttatctctaatagatcaaggaatagatgatcctagtcatcattattacattttaaggtacat 20274319  T
Q  479 acatataggacttttatgtgtacaagaatcagctatagacagacctaccatggctgcagt 538  Q
    ||| ||||||||| | ||||||||||||   ||| |||| || || || |||||||||||    
T  20274320 acacataggacttctgtgtgtacaagaaattgctgtagataggcccactatggctgcagt 20274379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 506
Target Start/End: Original strand, 20295069 - 20295196
Alignment:
Q  379 tcatttaggtttggatacaatggagggaaggaaatattttatctttaatagaaccagaaatatatattcatagttatcatgagaatattttgagatgcat 478  Q
    |||||||||| |||||||| ||||  || |  |||||| ||||| ||||||| | ||||||||||  || |||| ||||| |  | |||||||| | |||    
T  20295069 tcatttaggtctggatacagtggacagatgacaatattctatctctaatagatcaagaaatatatgatcctagtaatcataattacattttgaggtacat 20295168  T
Q  479 acatataggacttttatgtgtacaagaa 506  Q
    ||||||||||||||| || || ||||||    
T  20295169 acatataggacttttgtgcgttcaagaa 20295196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 20168109 - 20168035
Alignment:
Q  1 tatggctagaatctttggagggggagacaatcaggtcaatacttccagaattgtcggaacatagtaagtgtgcct 75  Q
    ||||||||||||||||||||| || ||  |||||| |||||||  ||| ||||| ||||| ||||||||| ||||    
T  20168109 tatggctagaatctttggaggaggtgaagatcaggccaatactagcaggattgttggaacttagtaagtgcgcct 20168035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 20284980 - 20285048
Alignment:
Q  1 tatggctagaatctttggagggggagacaatcaggtcaatacttccagaattgtcggaacatagtaagt 69  Q
    ||||| |||||||||||||||||||||  |||||| |||||||   || || |||||||| ||||||||    
T  20284980 tatggttagaatctttggagggggagaagatcaggccaatactagaaggatagtcggaacttagtaagt 20285048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 8e-50; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 139 - 291
Target Start/End: Complemental strand, 40823722 - 40823570
Alignment:
Q  139 tatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttggtactagagatcattagcgggagaagaa 238  Q
    |||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||| ||||| ||||||||||    
T  40823722 tatatgtcccctgaatatgcgatgcaaggactgttttcagagaaatcagatgtctttagctttggtgttttgatactagagattattagtgggagaagaa 40823623  T
Q  239 acccaagcttttatgacaatgagcatgctctgagtcttgtaggatttgtaagc 291  Q
    || |||| |||||||||||||||||||| ||||  ||| ||||||||||||||    
T  40823622 actcaagattttatgacaatgagcatgcactgacccttttaggatttgtaagc 40823570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 40823465 - 40823398
Alignment:
Q  376 ttttcatttaggtttggatacaatggagggaaggaaatattttatctttaatagaaccagaaatatat 443  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| | ||||||||||    
T  40823465 ttttcatgtaggtttggatacaatggagggaaggcaatattttatcttttatagatcaagaaatatat 40823398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 36419609 - 36419647
Alignment:
Q  131 gcagtggctatatgtctcctgaatatgcaatgcaaggac 169  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  36419609 gcagtggatatatgtctccggaatatgcaatgcaaggac 36419647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 31708590 - 31708630
Alignment:
Q  181 aaatcagatgtttttagctttggtgttttggtactagagat 221  Q
    |||||||||||||| ||||||||||||||  ||||||||||    
T  31708590 aaatcagatgttttcagctttggtgttttactactagagat 31708630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 36366668 - 36366744
Alignment:
Q  131 gcagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgtt 207  Q
    ||||||||||||||||||| || ||||| ||| | ||| | || |||| |||||| |||||||| || |||||||||    
T  36366668 gcagtggctatatgtctccagagtatgctatggatggaatcttctcagtgaaatctgatgttttcagttttggtgtt 36366744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 4159717 - 4159639
Alignment:
Q  131 gcagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgtttt 209  Q
    ||||||| |||||| | ||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||| |||||    
T  4159717 gcagtggttatatgccgcctgaatatgcaatggaaggacttttttctgagaaatcagatgtttatagctttggagtttt 4159639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 290
Target Start/End: Complemental strand, 4130351 - 4130194
Alignment:
Q  133 agtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttggtactagagatcattagcggga 232  Q
    ||||| |||||| | |||||||||||||||   |||||||| ||||||||||||||||| | |||||||||||||||  | ||||||||  | |||||      
T  4130351 agtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctagagattgtaagcggac 4130252  T
Q  233 gaagaaacccaagcttttatgacaatgagcatgctctgagtcttgtaggatttgtaag 290  Q
    |||||||    ||||||||| | |||||| || |||| || ||||| || ||||||||    
T  4130251 gaagaaataacagcttttatcaaaatgaggattctcttagccttgttggctttgtaag 4130194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 4142698 - 4142638
Alignment:
Q  131 gcagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgt 191  Q
    ||||||| |||||| | ||||||||||||||| | || ||||| |||||||||||||||||    
T  4142698 gcagtggttatatgccacctgaatatgcaatggaggggcttttctcagagaaatcagatgt 4142638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 290
Target Start/End: Complemental strand, 4120272 - 4120113
Alignment:
Q  131 gcagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttggtactagagatcattagcgg 230  Q
    ||||||| |||||| | || |||||||||||| | || ||||| || |||||||||||||| | ||||||||| |||||  | ||||||||  | || ||    
T  4120272 gcagtggttatatgccgccagaatatgcaatggaggggcttttctctgagaaatcagatgtatatagctttggggttttattgctagagattgtcagtgg 4120173  T
Q  231 gagaagaaacccaagcttttatgacaatgagcatgctctgagtcttgtaggatttgtaag 290  Q
    | |||||||  | ||||||||| |||  ||| || | || || |||||||| ||||||||    
T  4120172 gcgaagaaatacgagcttttatcacagcgaggattcacttagccttgtaggctttgtaag 4120113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 203
Target Start/End: Original strand, 23189886 - 23189956
Alignment:
Q  133 agtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttgg 203  Q
    |||||||| ||||||||||||||||| ||| |||| ||||| ||||  ||||| || || |||||||||||    
T  23189886 agtggctacatgtctcctgaatatgctatggaaggccttttctcagttaaatccgacgtctttagctttgg 23189956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 203
Target Start/End: Complemental strand, 4150716 - 4150644
Alignment:
Q  131 gcagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttgg 203  Q
    ||||||| |||||| | ||||||||||||||| | || ||||| || || ||||||||||| | |||||||||    
T  4150716 gcagtggttatatgccgcctgaatatgcaatggaggggcttttctctgaaaaatcagatgtctatagctttgg 4150644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 2704384 - 2704305
Alignment:
Q  131 gcagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttg 210  Q
    ||||||| ||||||||||| ||||| |||||| | ||  | |||||||||||||||||||||||||||||||| ||||||    
T  2704384 gcagtggatatatgtctccagaatacgcaatggaggggttgttttcagagaaatcagatgtttttagctttggggttttg 2704305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 2712034 - 2711955
Alignment:
Q  131 gcagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttg 210  Q
    ||||||| ||||||||||| |||||||||||| ||||  | |||||||||||||||||| ||||||| ||||| ||||||    
T  2712034 gcagtggatatatgtctccagaatatgcaatgaaagggttgttttcagagaaatcagatatttttagttttggagttttg 2711955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 2716951 - 2716872
Alignment:
Q  131 gcagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttg 210  Q
    ||||||| || |||||||| |||||||||||| ||||| | |||||||||||||||||||| ||||| ||||| ||||||    
T  2716951 gcagtggatacatgtctccggaatatgcaatggaaggattgttttcagagaaatcagatgtatttagttttggggttttg 2716872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 2723574 - 2723495
Alignment:
Q  131 gcagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttg 210  Q
    ||||||| || |||||||| |||||||||||| |||| || |||||||||||||||||||| ||||| ||||| ||||||    
T  2723574 gcagtggatacatgtctccggaatatgcaatggaagggctgttttcagagaaatcagatgtatttagttttggggttttg 2723495  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 2745404 - 2745325
Alignment:
Q  131 gcagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttg 210  Q
    ||||||| || |||||||| |||||||||||| |||| || |||||||||||||||||||| ||||| ||||| ||||||    
T  2745404 gcagtggatacatgtctccggaatatgcaatggaagggctgttttcagagaaatcagatgtatttagttttggggttttg 2745325  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 2681892 - 2681800
Alignment:
Q  132 cagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttggtactagagatcat 224  Q
    ||||||||||||||||||||||||||| ||| | |||   || ||||  ||||||||||||||||||||||| ||| | || |||||||||||    
T  2681892 cagtggctatatgtctcctgaatatgctatggacggaaacttctcagttaaatcagatgtttttagctttggagttcttgtgctagagatcat 2681800  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 2698360 - 2698270
Alignment:
Q  131 gcagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttggtactagagat 221  Q
    ||||||| ||||||||||||||||| || ||| |||| ||  ||||||  ||||||||||| | ||| |||||||| ||  ||||||||||    
T  2698360 gcagtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagat 2698270  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 453890 - 453819
Alignment:
Q  132 cagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttgg 203  Q
    |||||| ||||||||| | |||||||||||||| |||| || |||||| ||||||||||| |||||||||||    
T  453890 cagtggttatatgtcttccgaatatgcaatgcatggacattattcagaaaaatcagatgtgtttagctttgg 453819  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 469846 - 469788
Alignment:
Q  133 agtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgt 191  Q
    ||||| ||||||||||| |||||||||||||| ||||  ||||| |||||||| |||||    
T  469846 agtggttatatgtctccggaatatgcaatgcacggacaattttctgagaaatccgatgt 469788  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 47627662 - 47627733
Alignment:
Q  132 cagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttgg 203  Q
    |||||| || |||||||| |||||||||||||| ||||  ||||||||||| || ||||||||||| |||||    
T  47627662 cagtggttacatgtctccggaatatgcaatgcatggacaattttcagagaagtctgatgtttttagttttgg 47627733  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 21936676 - 21936750
Alignment:
Q  166 ggacttttttcagagaaatcagatgtttttagctttggtgttttggtactagagatcattagcgggagaagaaac 240  Q
    |||| |||||||| ||| || |||||||||||||| |||||| ||||||| ||||| ||||| || | |||||||    
T  21936676 ggacatttttcagtgaagtccgatgtttttagcttcggtgttgtggtacttgagattattagtggaaaaagaaac 21936750  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 47593646 - 47593710
Alignment:
Q  142 atgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgt 206  Q
    ||||| || |||||||||||||  ||||  ||||||||||| || ||||||||||| ||||||||    
T  47593646 atgtccccagaatatgcaatgcttggacacttttcagagaagtcggatgtttttagttttggtgt 47593710  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 224
Target Start/End: Original strand, 3103478 - 3103571
Alignment:
Q  131 gcagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttggtactagagatcat 224  Q
    ||||||| |||||| |||| |||||||| ||| ||||| | |||||||  || ||||||||||| |||||||||||| |  | |||||||||||    
T  3103478 gcagtggatatatggctccagaatatgctatggaaggattgttttcagtaaagtcagatgttttcagctttggtgttcttttgctagagatcat 3103571  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 230
Target Start/End: Original strand, 5829873 - 5829972
Alignment:
Q  131 gcagtggctatatgtctcctgaatatgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttggtactagagatcattagcgg 230  Q
    ||||||| |||||| |||| || |||||| |||| ||  |||| |||   ||||| ||||||||||||||||| ||| | ||||| ||||||||||||||    
T  5829873 gcagtggatatatgcctccagagtatgcagtgcatgggtttttctcaataaaatctgatgtttttagctttggagttgttgtacttgagatcattagcgg 5829972  T

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