View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20691_high_7 (Length: 511)
Name: NF20691_high_7
Description: NF20691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20691_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 4853928 - 4853801
Alignment:
| Q |
1 |
atagagtgaagaaaaatgtccttacaaataattcatcaacgagacacttatatttgctgtaaacatttcaatttcttacttctttcattattataatgta |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
4853928 |
atagagtgaagaaaaatgtccttccaaataattcatcaacgagacacttatatttgctgtaaacatttcaatttcttacttcttgcattattatagtgta |
4853829 |
T |
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| Q |
101 |
taagtctagcctttaaactactttatat |
128 |
Q |
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| T |
4853828 |
taagtctagccgttaaactactttatat |
4853801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 190 - 311
Target Start/End: Complemental strand, 4853784 - 4853661
Alignment:
| Q |
190 |
catgtgtaaacttacatacattataaagattaaaagta--aagtttatcttaaaacttgtttactttatattaaagacataattttataataaatagaaa |
287 |
Q |
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|||||| |||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4853784 |
catgtgcaaacttgcatacattataaagattaaaagtagtaagtttatcttagaacttgtttactttatattaaaaacataattttataataaatagaaa |
4853685 |
T |
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| Q |
288 |
ttactactttcaataaaaacatca |
311 |
Q |
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|||||||||||||||||||||||| |
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| T |
4853684 |
ttactactttcaataaaaacatca |
4853661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 4853615 - 4853561
Alignment:
| Q |
257 |
attaaagacataattttataataaatagaaattactactttcaataaaaacatca |
311 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4853615 |
attaaaaacataattttataataaatagaaataactactttcaataaaaacatca |
4853561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 18247755 - 18247807
Alignment:
| Q |
231 |
tttatcttaaaacttgtttactttatattaaagacataattttataataaata |
283 |
Q |
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|||||||||||| || | | ||||||||||| |||||||||||||||||||| |
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| T |
18247755 |
tttatcttaaaatttatacattttatattaaatacataattttataataaata |
18247807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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