View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20691_high_8 (Length: 482)
Name: NF20691_high_8
Description: NF20691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20691_high_8 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 8 - 482
Target Start/End: Original strand, 13923397 - 13923871
Alignment:
| Q |
8 |
catcatcaaacatcttctttgcaacatgaaaatcgccacattttgagtacatgtttatcagcgctgataccacgtatgtgctctcctgaaaaactgtttt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13923397 |
catcatcaaacatcttctttgcaacatgaaaatcgccacattttgagtacatgtttatcagcgctgataccacgtatgtgctctcctgaaaaactgtttt |
13923496 |
T |
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| Q |
108 |
actaatcatttgatggatttgttgtccttcaggaagacctgccaaatcactacaagcacccaaaactgtcacgaaagttccagtggttggttttaaccca |
207 |
Q |
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| T |
13923497 |
actaatcatttgatggatttgttgtccttcaggaagacctgccaaatcactacaagcacccaaaactgtcacgaaagttccagtggttggttttaaccca |
13923596 |
T |
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| Q |
208 |
tcattagcttgcattttgttaaataatttcaacgcttcttcacttagaccatgttgtacatatcctgtcatcatagcagtccaagtaatgacattctttt |
307 |
Q |
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| T |
13923597 |
tcattagcttgcattttgttaaataatttcaacgcttcttcacttagaccatgttgtacatatcctgtcatcatagcagtccaagtaatgacattctttt |
13923696 |
T |
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| Q |
308 |
ctggcattgcatgaaataacttctctgccctattcaaatccccattttgaataaaacctgggaccattgtattccacgaaggcatatctctctctggcat |
407 |
Q |
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| T |
13923697 |
ttggcattgcatgaaataacttctctgccctattcaaatccccattttgaataaaacctgtgaccattgtattccatgaaggcatatctctctctggcat |
13923796 |
T |
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| Q |
408 |
tctctcaaacaacgtcaaagcctcatcaacccttccattctgcgcatagcatgcaatcatcgcattccaagaaac |
482 |
Q |
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| T |
13923797 |
tctctcaaacaacttcaaagcctcatcaaaccttccattctgcgcataacctgcaatcatcgcattccatgaaac |
13923871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 8 - 482
Target Start/End: Complemental strand, 14314319 - 14313845
Alignment:
| Q |
8 |
catcatcaaacatcttctttgcaacatgaaaatcgccacattttgagtacatgtttatcagcgctgataccacgtatgtgctctcctgaaaaactgtttt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14314319 |
catcatcaaacatcttctttgcaacatgaaaatcgccacatttagagtacatgtttatcagcgctgataccacgtatgtgctctcctgaaaaactgtttt |
14314220 |
T |
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| Q |
108 |
actaatcatttgatggatttgttgtccttcaggaagacctgccaaatcactacaagcacccaaaactgtcacgaaagttccagtggttggttttaaccca |
207 |
Q |
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| T |
14314219 |
actaatcatttgatggatttgttgtccttcaggaagacctgccaaatcactacaagcacccaaaactgtcacgaaagttccagtggttggttttaaccca |
14314120 |
T |
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| Q |
208 |
tcattagcttgcattttgttaaataatttcaacgcttcttcacttagaccatgttgtacatatcctgtcatcatagcagtccaagtaatgacattctttt |
307 |
Q |
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| T |
14314119 |
tcattagcttgcattttgttaaataatttcaacgcttcttcacttagaccatgttgtacatatcctgtcatcatagcagtccaagtaatgacattctttt |
14314020 |
T |
|
| Q |
308 |
ctggcattgcatgaaataacttctctgccctattcaaatccccattttgaataaaacctgggaccattgtattccacgaaggcatatctctctctggcat |
407 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| | ||||||||||||||| ||||||||||| ||||| ||||| |
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| T |
14314019 |
gtggcattgcatgaaataactgctctgccctattcaaatccccattctgaataaaaccagtgaccattgtattccaagaaggcatatccctctccggcat |
14313920 |
T |
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| Q |
408 |
tctctcaaacaacgtcaaagcctcatcaacccttccattctgcgcatagcatgcaatcatcgcattccaagaaac |
482 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||||| | |||||||||||||||||| ||||| |
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| T |
14313919 |
tctctcaaacaacttcaaagcctcatcaaaccttccattctgcgcataacctgcaatcatcgcattccacgaaac |
14313845 |
T |
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