View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20691_low_1 (Length: 964)
Name: NF20691_low_1
Description: NF20691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20691_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 640 - 930
Target Start/End: Complemental strand, 3696112 - 3695821
Alignment:
| Q |
640 |
atagtgtgaaaatcatattctcactgctagtggtgtcatgtatgaaatttgtagttttaaaatgtccctctgatgtcatattttatgttaattccatccg |
739 |
Q |
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| T |
3696112 |
atagtgtgaacaacaaattctctcagctagtagtgtcatgtatgaaatttgtagtattaaaatgtcccactgatgtcatattttat--tgattccatccg |
3696015 |
T |
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| Q |
740 |
caaaacgataaaattctttgattccttgcttttggtgaatattgaatagaataagttgtttagtctttttggtccaaagtaaagaagttctctttgtttc |
839 |
Q |
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| T |
3696014 |
caaaaagataaaattctttgattccttgcttttggtgaatattgaatagaataagttgtttagtctttttggtccaaagtaaagaagttctttttgtttc |
3695915 |
T |
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| Q |
840 |
ttgttaccaggcttaaattaaatacaaggaaaataagagaattggcagca---cacagcagcattcatggcagaagcagaccggtctcaactcc |
930 |
Q |
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| T |
3695914 |
ttgttaccaggcttaaattaaatacaaggaaaataagagaattggcagcatacaacagcagcattcatagcagaagcagactggtctaaactcc |
3695821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 629 - 830
Target Start/End: Complemental strand, 3684849 - 3684648
Alignment:
| Q |
629 |
gtgcatgaactatagtgtgaaaatcatattctcactgctagtggtgtcatgtatgaaatttgtagttttaaaatgtccctctgatgtcatattttatgtt |
728 |
Q |
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| T |
3684849 |
gtgcatgaactatagtgtgaaaaacatattctcactgctagtagtgtcatgtgtgaattttgtagtgttaaaatgtctcactgatatcatgttttatgtt |
3684750 |
T |
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| Q |
729 |
aattccatccgcaaaacgataaaattctttgattccttgcttttggtgaatattgaatagaataagttgtttagtctttttggtccaaagtaaagaagtt |
828 |
Q |
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| T |
3684749 |
gattccatccgcaaaaagataaaattctttgattccttgcttttggtgaatattgaatagaataagttgtttagtatttttggtgcaaagtaaagaagtt |
3684650 |
T |
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| Q |
829 |
ct |
830 |
Q |
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|| |
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| T |
3684649 |
ct |
3684648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 824 - 955
Target Start/End: Complemental strand, 3684614 - 3684483
Alignment:
| Q |
824 |
aagttctctttgtttcttgttaccaggcttaaattaaatacaaggaaaataagagaattggcagcacacagcagcattcatggcagaagcagaccggtct |
923 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3684614 |
aagttctttttgtttcttgttaccaggcttaaattaaaaacaaggaaaagaagagaattggcagcacacagcagcattcatggcagaagcagaccggtct |
3684515 |
T |
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| Q |
924 |
caactccatggacttcaccacgggagaataat |
955 |
Q |
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| T |
3684514 |
caactccatggacttcaccacgggagaataat |
3684483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 3685424 - 3685304
Alignment:
| Q |
19 |
caatgaagcattacaacacatggtgcatatnnnnnnngctgcgaacttgttgtaaggcataaatctatgttctccattgaagnnnnnnnntggtatacga |
118 |
Q |
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|||||||||||||||||||||||||||||| ||| ||| ||||||||||| |||| || |||||||||||||||| |||||||||| |
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| T |
3685424 |
caatgaagcattacaacacatggtgcatataaaacgagctacgagcttgttgtaagtcatatatttatgttctccattgaaaaataaaaatggtatacga |
3685325 |
T |
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| Q |
119 |
tagatttactttatgtaactc |
139 |
Q |
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||||||||||||||||||||| |
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| T |
3685324 |
tagatttactttatgtaactc |
3685304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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