View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20691_low_10 (Length: 481)
Name: NF20691_low_10
Description: NF20691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20691_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 43199542 - 43200003
Alignment:
| Q |
1 |
tactccaaaataaaaatgggaaaggagattcctcaaacacaagcaattctcaactgtatcgacctctccaatcctaacatcgaccataacgttgatttac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43199542 |
tactccaaaataaaaatgggaaaggagattcctcaaacacaagcaattctcaactgtatcgacctctccaatcctaacatcgaccataacgttgatttac |
43199641 |
T |
|
| Q |
101 |
tcaaacaggtaaacacactaaaacgaattcattctcttatcctttctgtttgttattactactgctactgacaagtaagaagacactcataaatttcttt |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43199642 |
tcaaacaggtaaacacactaaaacaaattcattctcttatcctttctgtttgttattactactgctactgacaagtaagaagacactcataaatttcttt |
43199741 |
T |
|
| Q |
201 |
ctaatttacgttccgtggcgaataactaaagtcttgcaccgattctggttttttctaccttatcaatcatggaataagccaagactttatggacgaggtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43199742 |
ctaatttacgttccgtggcgaataactaaagtcttgcaccgattctggttttttctaccttatcaatcatggaataagccaagactttatggacgaggtt |
43199841 |
T |
|
| Q |
301 |
tttgcccagagcaacacatttttcactcttcctctcaatgaaaagatgaaacttctccgtaacgatagccataagggttatactcctgttcttgatgaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43199842 |
tttgcccagagcaacacatttttcactcttcctctcaatgaaaagatgaaacttctccgtaacgatagccataagggttatactcctgttcttgatgaaa |
43199941 |
T |
|
| Q |
401 |
ttcttgatcctcaaaaccaattacatggagattacaaagaagggtactatattggtgttgaa |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43199942 |
ttcttgatcctcaaaaccaattacatggagattacaaagaagggtactatattggtgttgaa |
43200003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University