View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20691_low_13 (Length: 440)
Name: NF20691_low_13
Description: NF20691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20691_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 95 - 426
Target Start/End: Original strand, 45306445 - 45306772
Alignment:
| Q |
95 |
atacgtcaaatgatttttatctaactaccaaatcattttcttaatttttgaggctaaatactagcttgtactcctttagattgattatcctaatggatgt |
194 |
Q |
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| T |
45306445 |
atacgtcaaatgatttttatctaactaccaaatcattttctttatttttgaggctaaatactagcttgtactcctttagattgattttcctaatggatgt |
45306544 |
T |
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| Q |
195 |
gttttgattctgtatttaactaagaacatcattaattttgttttaggtatgaaataatatgcattccttatactcttttttgtgtagtacttgaaatgtt |
294 |
Q |
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| T |
45306545 |
gttttgattctgtatttaactaagaacatcattaattttgttttaggtatgaaataatatgcattccttatactctattttgtg----acaag-attgtt |
45306639 |
T |
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| Q |
295 |
tggatatgtattcttgctaataattatccttttccaaaatccatttttcctcttaattcaccttcttgttttactt-aaatttttatgcgtaattgctaa |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
45306640 |
tggatatgtattcttgctaataattatccttttccaaaatccatttttcctcttaattcaccttcttgttttacttaaaaattttatgcgtaattgctaa |
45306739 |
T |
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| Q |
394 |
ttttatttgttaatttgattgtgtaggatgatg |
426 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
45306740 |
ttttatttgttaatttgattatgtaggatgatg |
45306772 |
T |
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