View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20691_low_16 (Length: 421)
Name: NF20691_low_16
Description: NF20691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20691_low_16 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 7 - 421
Target Start/End: Complemental strand, 49115955 - 49115537
Alignment:
| Q |
7 |
agcaaagggggtggaatggaattagtggcaattcctaataagataagatatctgaaaaaagaatattaccttctatacgctgccatgctcggccatatag |
106 |
Q |
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| T |
49115955 |
agcaaagggggtgggatggaattagtggcaattcctaataagataagatatctgaaaaaagaatattaccttctatacgctgccatgctcggccatatag |
49115856 |
T |
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| Q |
107 |
cttgagggcttctagaaatcgattatgttcgtcttcagtccatcgttctctttgttttgtgattgtatatggctttcttgtctgcaaatattgtgtatgt |
206 |
Q |
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| T |
49115855 |
cttgagggcttctagaaatcgattatgttcgtcttcagtccatcgttctctttgttttgtgattgtatatggctttcttgtctgcaaatattgtgtatgt |
49115756 |
T |
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| Q |
207 |
atgtatgta----gttagattgattgaatggtttatgttatgtgggattaagaaatggaatgcaaaataaagtagtgagtgaccttgagaacgacgtctt |
302 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
49115755 |
atgtatgtatgtagttagattgattgaatggtttatgttatgtgagattaagaaatggaaagcaaaataaggtagtgagtgaccttgagaacgacgtctt |
49115656 |
T |
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| Q |
303 |
ctccagaggagtatgctgctgcatccatgaggttcagcagatcttattccctgaggagagggaggagtgaggtggtttggtttgtttgttgtgacatgaa |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49115655 |
ctccagaggagtatgctgctgcatccatgaggttcagcagatcttattccctgaggagagggaggagtgaggtggtttggtttgtttgttgtgacatgaa |
49115556 |
T |
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| Q |
403 |
gcagagcagaggaaatagt |
421 |
Q |
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| T |
49115555 |
gcagagcagaggaaatagt |
49115537 |
T |
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