View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20691_low_17 (Length: 398)
Name: NF20691_low_17
Description: NF20691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20691_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 388
Target Start/End: Original strand, 106776 - 107145
Alignment:
| Q |
19 |
ttgaggacacatttatcttcactattaatgtgtttgaaatgtaacgatggtgaccaatcgtcggcatacacttcttttggaagatagaaacatcttacca |
118 |
Q |
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| T |
106776 |
ttgaggacacatttatcttcactattaatgtgtttgaaatgtaacgatggtgaccaatcgtcggcatacacttcttttggaagatagaaacatcttacca |
106875 |
T |
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| Q |
119 |
aatcagtgaagtgtctgcatgattttttacaatatttgatcatctcttcattttgatctttctttgacctttgtggattgtaatcttcaaagtagttaaa |
218 |
Q |
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| T |
106876 |
aatcagtgaagtgtctgcatgattttttacaatatttgatcatctcttcattttgatctttctttgacctttgtggattgtaatcttcaaagtagttaaa |
106975 |
T |
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| Q |
219 |
tgcaagttcaagaaaacttagatcattattatccttgcaaaccttttgatataattgttccaagacataaaatggaagctgattttcaaggagtaacaaa |
318 |
Q |
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| T |
106976 |
tgcaagttcaagaaaacttagatcattattatccttgcaaaccttttgatataattgttccaagacataaaatggaagctgattttcaaggagtaacaaa |
107075 |
T |
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| Q |
319 |
tctctttgtatacccttgtaaatccatgatgttgtgaacatgtaatccttttccctttcagattcctttg |
388 |
Q |
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| T |
107076 |
tctctttgtatacccttgtaaatccatgatgttgtgaacatgtaatccttttccctttcagattcctttg |
107145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 77 - 373
Target Start/End: Original strand, 113496 - 113792
Alignment:
| Q |
77 |
cgtcggcatacacttcttttggaagatagaaacatcttaccaaatcagtgaagtgtctgcatgattttttacaatatttgatcatctcttcattttgatc |
176 |
Q |
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| T |
113496 |
cgtcggcataaacttcttttggaagatagaaacatcttatcaaatcagtgaagtgtttgcatgatttac-acaatattggatcatctcttcattttgatc |
113594 |
T |
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| Q |
177 |
tttctttgacctttgtggattgtaatcttcaaagtagttaaatgcaagttcaagaaaacttagatcattattatccttgcaaaccttttgatataattgt |
276 |
Q |
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| T |
113595 |
tttcttttacctttgtggattataatcttcaaagtagtaaaatgcaagttcaagaaaacttagatcattattatccttgcaaaccttttgatataattgt |
113694 |
T |
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| Q |
277 |
tccaagacataaaatggaagctgattttcaaggagtaacaaatctctttgtatacccttgtaaatccatgatgttgtgaacatgt-aatccttttccc |
373 |
Q |
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| T |
113695 |
tccaagacaaaaaatggaagctgattttcaaggagtaacaaatctctttgtatacccttgtaaatccatgatgttgtgaacatgtaaatccttttccc |
113792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 383
Target Start/End: Complemental strand, 142771 - 142686
Alignment:
| Q |
298 |
tgattttcaaggagtaacaaatctctttgtatacccttgtaaatccatgatgttgtgaacatgtaatccttttccctttcagattc |
383 |
Q |
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| T |
142771 |
tgattttcaagcagcaacaaatctctttgtgtcattttgtaaatccatgatgttttaaacatgaaatcattttcctgttcagattc |
142686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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