View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20691_low_18 (Length: 390)
Name: NF20691_low_18
Description: NF20691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20691_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 377
Target Start/End: Original strand, 13157647 - 13158011
Alignment:
| Q |
9 |
gattattctacctataactcctagaaatataagaactatatatgtttgt-gaagagtgtaagaaacgtcaagagaaacacaaatgttttaagactataag |
107 |
Q |
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| T |
13157647 |
gattattctacctataactcctagaaatataagaactatat--gtttgttgaagagtgtagaaaacgtcaagagaaacacaaatgttttaagactataag |
13157744 |
T |
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| Q |
108 |
aaagagagatgtcatgtctctac-nnnnnnnncttaaaatattagggttttattaatgagtgatctggaactctagttaacaaatctataaataaatatt |
206 |
Q |
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| T |
13157745 |
aaagagagatgtcatgtctctgcaaaaaaaaacttaaaatattagaattttattaatgagtggtctggaactctcgttaacaaatctaaaaataaatatt |
13157844 |
T |
|
| Q |
207 |
tactattcatagtctttaaaaagtacatc-----tactagttaacatttttctttttaaaataagcatcttttgcatacaaatgaatgattattctaagt |
301 |
Q |
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||||||| |||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13157845 |
tactatttatagtccttaaagagtacatcagatgcactagttaacatttttctttttaaaataagcatcttttgcatacaaatgaatgattattctaagt |
13157944 |
T |
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| Q |
302 |
caaaaataaaattacatttacataaaacttatttttagaatccaaatataaattatttcacctcaaactcaatttt |
377 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13157945 |
caaaaataaa--------tacataaaacttatttttagaat-caaatataaattatttcacctcaaactcaatttt |
13158011 |
T |
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