View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20691_low_29 (Length: 271)

Name: NF20691_low_29
Description: NF20691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20691_low_29
NF20691_low_29
[»] chr2 (16 HSPs)
chr2 (11-271)||(44615487-44615752)
chr2 (143-271)||(44624860-44624988)
chr2 (43-271)||(39153137-39153356)
chr2 (164-271)||(39472761-39472868)
chr2 (155-271)||(39205730-39205846)
chr2 (169-271)||(39371195-39371297)
chr2 (143-271)||(39413005-39413133)
chr2 (52-103)||(39216894-39216945)
chr2 (167-270)||(39387494-39387597)
chr2 (20-74)||(44749549-44749603)
chr2 (164-271)||(39138724-39138828)
chr2 (193-270)||(44895133-44895210)
chr2 (167-271)||(39196510-39196614)
chr2 (143-271)||(39216735-39216863)
chr2 (217-270)||(39188804-39188857)
chr2 (167-256)||(39396652-39396741)
[»] chr8 (2 HSPs)
chr8 (53-271)||(44730193-44730402)
chr8 (53-258)||(44949787-44949986)
[»] scaffold0283 (1 HSPs)
scaffold0283 (53-258)||(5767-5966)
[»] chr5 (2 HSPs)
chr5 (143-271)||(17060724-17060852)
chr5 (167-271)||(33562367-33562471)
[»] chr7 (1 HSPs)
chr7 (164-271)||(19808981-19809085)


Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 271
Target Start/End: Complemental strand, 44615752 - 44615487
Alignment:
Q  11 cataggcatagagacaataagagaaatattggtgaccga-----ctaaagaatttctaaatcaacatacgagagactttatttgcaaaacccagggtcct 105  Q
    |||| ||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  44615752 cataagcatagagacaataagagaaatattggtgaccgaaccgactaaagaatttctaaatcaacataccagagactttatttgcaaaacccagtgtcct 44615653  T
Q  106 gcacagcttcacagctatcttgtattcagcagcagacgcaacagaagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatc 205  Q
     |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44615652 acacagcttcacagctatcttgtattcagcagcagacgcaacataagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatc 44615553  T
Q  206 gataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttagctttc 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44615552 gataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttagctttc 44615487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 143 - 271
Target Start/End: Complemental strand, 44624988 - 44624860
Alignment:
Q  143 gcaacagaagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaat 242  Q
    ||||||||  |||||| |||  ||||||||||||||||||| ||| ||  |||||| |||||||| ||||||||||||||||| ||| |||||||| |||    
T  44624988 gcaacagatccaaaaagcttttagacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaataat 44624889  T
Q  243 tttcggtattttctttcatgttagctttc 271  Q
    |||| ||||||||||||||||||||||||    
T  44624888 tttcagtattttctttcatgttagctttc 44624860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 271
Target Start/End: Complemental strand, 39153356 - 39153137
Alignment:
Q  43 tgaccgactaaagaatttctaaatcaacatacgagagactttatttgcaaaacccagggtcctgcacagcttcacagctatcttgtattcagcagcagac 142  Q
    |||| ||| |||| || ||||||| ||||||| ||| |||||||||||||||||||||||||   | || | ||||||  |||||| || |             
T  39153356 tgactgaccaaagcatgtctaaattaacataccagaaactttatttgcaaaacccagggtccgaaatagttccacagcagtcttgtgttga--------- 39153266  T
Q  143 gcaacagaagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaat 242  Q
    |||||| | ||||||| ||  ||||||||||||| ||| ||  || |||||||||| |||||||| |||| || |||||| |||||| || |||||||||    
T  39153265 gcaacaaatgcaaaaagctccaagacttcatctttatcgaaagaagtaaccaatccataaatcgacaaaaccagtagaaaaccaagaaccaccaaagaat 39153166  T
Q  243 tttcggtattttctttcatgttagctttc 271  Q
    |||| ||||||||||| || |||||||||    
T  39153165 tttcagtattttcttttattttagctttc 39153137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 271
Target Start/End: Original strand, 39472761 - 39472868
Alignment:
Q  164 aagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgt 263  Q
    ||||||||||||||||||||  || ||| |||| | ||||| || |||| || |||||| |||||| |  ||||||||||||| ||||||||||||||||    
T  39472761 aagacttcatcttcatcaaaagaagtaagcaattcataaattgacaaaagcagtagaaaaccaagaactaccaaagaattttcagtattttctttcatgt 39472860  T
Q  264 tagctttc 271  Q
    || |||||    
T  39472861 taactttc 39472868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 271
Target Start/End: Original strand, 39205730 - 39205846
Alignment:
Q  155 aaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtatttt 254  Q
    ||||||| ||| |||||||||| ||||||  ||| || ||||   |||||||| |||| || |||||| |||||| || ||| ||||||||| |||||||    
T  39205730 aaaatctcgaaaacttcatctttatcaaaagaatcaagcaatttataaatcgacaaaagcagtagaaaaccaagaaccgccatagaattttcagtatttt 39205829  T
Q  255 ctttcatgttagctttc 271  Q
    ||||||| |||||||||    
T  39205830 ctttcatcttagctttc 39205846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 271
Target Start/End: Complemental strand, 39371297 - 39371195
Alignment:
Q  169 ttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttagct 268  Q
    |||||||||||||||  || |||||||||| ||| | || |||| ||||||||| |||||| || |||||| |||||   |||||||||||||||| |||    
T  39371297 ttcatcttcatcaaaagaagtaaccaatccataatttgacaaaagcaatagaaaaccaagaaccaccaaaggatttttactattttctttcatgttggct 39371198  T
Q  269 ttc 271  Q
    |||    
T  39371197 ttc 39371195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 271
Target Start/End: Original strand, 39413005 - 39413133
Alignment:
Q  143 gcaacagaagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaat 242  Q
    |||||| | ||||||| ||  |||| |||||||||||| ||  || ||||||||||  |||  || |||| ||| ||||| | |||| || ||||||| |    
T  39413005 gcaacaaatgcaaaaagctccaagatttcatcttcatccaaaaaagtaaccaatccacaaactgacaaaagcaacagaaaactaagaaccgccaaagagt 39413104  T
Q  243 tttcggtattttctttcatgttagctttc 271  Q
    |||||||||||||||||| ||||||||||    
T  39413105 tttcggtattttctttcaagttagctttc 39413133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 39216945 - 39216894
Alignment:
Q  52 aaagaatttctaaatcaacatacgagagactttatttgcaaaacccagggtc 103  Q
    |||| |||||||||| ||||||| ||| ||||||||||||||||||||||||    
T  39216945 aaagcatttctaaattaacataccagaaactttatttgcaaaacccagggtc 39216894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 270
Target Start/End: Original strand, 39387494 - 39387597
Alignment:
Q  167 acttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttag 266  Q
    ||||||||||| ||||| |||| || ||  || ||||| || |||| ||  ||||| |||||| |  ||||||||||||| |||||||||||||||||||    
T  39387494 acttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtattttctttcatgttag 39387593  T
Q  267 cttt 270  Q
    ||||    
T  39387594 cttt 39387597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 44749549 - 44749603
Alignment:
Q  20 agagacaataagagaaatattggtgaccgactaaagaatttctaaatcaacatac 74  Q
    |||||||| | |||| ||| ||||||| |||||||||||||||||||||||||||    
T  44749549 agagacaaaaggagagatactggtgactgactaaagaatttctaaatcaacatac 44749603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 271
Target Start/End: Complemental strand, 39138828 - 39138724
Alignment:
Q  164 aagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgt 263  Q
    |||||||||||||||||||| ||| ||| |||| | ||||  || ||||||| |||||| || ||| || ||| ||||||||| |||||   ||||||||    
T  39138828 aagacttcatcttcatcaaaataagtaagcaattcataaactgacaaaatcagtagaaaaccgagaaccaccagagaattttcagtatt---tttcatgt 39138732  T
Q  264 tagctttc 271  Q
    ||||||||    
T  39138731 tagctttc 39138724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 270
Target Start/End: Original strand, 44895133 - 44895210
Alignment:
Q  193 caatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttagcttt 270  Q
    |||||| ||||| || |||| || |||||| |||||| || ||||||||||||| |||||| |||| |||||||||||    
T  44895133 caatccataaattgacaaaagcagtagaaaaccaagaaccaccaaagaattttcagtatttccttttatgttagcttt 44895210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 271
Target Start/End: Original strand, 39196510 - 39196614
Alignment:
Q  167 acttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttag 266  Q
    |||||||||||||||||  ||| || ||||   ||||| || |||| ||  ||||| |||||| || ||||||||||||| ||||| || ||||||||||    
T  39196510 acttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcagcagaaagccaagaaccgccaaagaattttcagtattgtcattcatgttag 39196609  T
Q  267 ctttc 271  Q
    |||||    
T  39196610 ctttc 39196614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 271
Target Start/End: Complemental strand, 39216863 - 39216735
Alignment:
Q  143 gcaacagaagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaat 242  Q
    |||||||| ||||||| ||  || |||||||||||| ||||  || |||||||||| ||||| || |||| ||  ||||| || ||| || |||||||||    
T  39216863 gcaacagatgcaaaaagctccaaaacttcatcttcaccaaaagaagtaaccaatccataaattgacaaaagcagaagaaaaccgagaaccaccaaagaat 39216764  T
Q  243 tttcggtattttctttcatgttagctttc 271  Q
    |||  ||||||||  ||||||||| ||||    
T  39216763 ttttagtattttcactcatgttagatttc 39216735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 39188804 - 39188857
Alignment:
Q  217 tagaaatccaagagcctccaaagaattttcggtattttctttcatgttagcttt 270  Q
    |||||| |||||| || ||||||||||| |  ||||||||||||||||||||||    
T  39188804 tagaaaaccaagaaccaccaaagaatttccattattttctttcatgttagcttt 39188857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 39396652 - 39396741
Alignment:
Q  167 acttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttct 256  Q
    |||||||||||||| ||  || ||| |||||| ||||| || |||| ||| | ||| |||||| || ||||||||||||| |||||||||    
T  39396652 acttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcaacaaaaaaccaagaaccgccaaagaattttcagtattttct 39396741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 53 - 271
Target Start/End: Complemental strand, 44730402 - 44730193
Alignment:
Q  53 aagaatttctaaatcaacatacgagagactttatttgcaaaacccagggtcctgcacagcttcacagctatcttgtattcagcagcagacgcaacagaag 152  Q
    |||||||||| ||||||| ||||||||||||||||  |||||  |||||||||  |||  ||| |||||||||||| ||||          ||||||| |    
T  44730402 aagaatttcttaatcaacttacgagagactttattcacaaaatgcagggtcctaaacacattcgcagctatcttgtgttca---------acaacagatg 44730312  T
Q  153 caaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtatt 252  Q
    |  ||| ||   ||||||||||| ||||||||||| ||| |||||  |||||||  ||||||||||||||||| ||| ||||| |||||||||| |||||    
T  44730311 cgtaaagctcagagacttcatctccatcaaagtaagtaagcaatctataaatcgtcaaaatcaatagaaatccgagaacctcctaagaattttcagtatt 44730212  T
Q  253 ttctttcatgttagctttc 271  Q
    |||||| ||||||||||||    
T  44730211 ttcttttatgttagctttc 44730193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 258
Target Start/End: Original strand, 44949787 - 44949986
Alignment:
Q  53 aagaatttctaaatcaaca---tacgagagactttatttgcaaaacccagggtcctgcacagcttcacagctatcttgtattcagcagcagacgcaacag 149  Q
    |||||||||| ||||||||   ||||||||||| ||||| ||||| ||||||||||  ||| |||||||||||| |||| |||||||         ||||    
T  44949787 aagaatttctgaatcaacaacttacgagagactatatttacaaaatccagggtcctaaacaccttcacagctatattgtgttcagca---------acag 44949877  T
Q  150 aagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggt 249  Q
    | ||| ||| |||  |||| ||||||  |||||||||| ||| |||||| ||||||| || ||||||||||||||  ||| |||||||||||||||  ||    
T  44949878 atgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaagaatttttagt 44949977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 258
Target Start/End: Original strand, 5767 - 5966
Alignment:
Q  53 aagaatttctaaatcaaca---tacgagagactttatttgcaaaacccagggtcctgcacagcttcacagctatcttgtattcagcagcagacgcaacag 149  Q
    |||||||||| ||||||||   ||||||||||| ||||| ||||| ||||||||||  ||| |||||||||||| |||| |||||||         ||||    
T  5767 aagaatttctgaatcaacaacttacgagagactatatttacaaaatccagggtcctaaacaccttcacagctatattgtgttcagca---------acag 5857  T
Q  150 aagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggt 249  Q
    | ||| ||| |||  |||| ||||||  |||||||||| ||| |||||| ||||||| || ||||||||||||||  ||| |||||||||||||||  ||    
T  5858 atgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaagaatttttagt 5957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 271
Target Start/End: Complemental strand, 17060852 - 17060724
Alignment:
Q  143 gcaacagaagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaat 242  Q
    |||||||| |||||||  |  ||||||||||||| |||||| ||| ||| |||||| |||| ||| || ||||| |||||||| ||| ||||||| ||||    
T  17060852 gcaacagatgcaaaaagatccaagacttcatcttgatcaaaataagtaaacaatccataaaccgacaagatcaacagaaatccgagaacctccaatgaat 17060753  T
Q  243 tttcggtattttctttcatgttagctttc 271  Q
     ||| |||||| |||| ||||||||||||    
T  17060752 attcagtatttgcttttatgttagctttc 17060724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 271
Target Start/End: Complemental strand, 33562471 - 33562367
Alignment:
Q  167 acttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttag 266  Q
    |||||||||||||||||  ||| || ||||   ||||| || |||| ||  ||||| |||||| || ||||| ||  ||| |||||||||||||||||||    
T  33562471 acttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcatcagaaaaccaagaaccgccaaaaaaaattcagtattttctttcatgttag 33562372  T
Q  267 ctttc 271  Q
    |||||    
T  33562371 ctttc 33562367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 271
Target Start/End: Complemental strand, 19809085 - 19808981
Alignment:
Q  164 aagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgt 263  Q
    |||||||||||||||||||| ||| ||| |||| | ||||  || |||| || |||||| |||||| || ||| ||||||||| ||| |   ||||||||    
T  19809085 aagacttcatcttcatcaaaataagtaagcaattcataaactgacaaaagcagtagaaaaccaagaaccaccagagaattttcagtact---tttcatgt 19808989  T
Q  264 tagctttc 271  Q
    ||||||||    
T  19808988 tagctttc 19808981  T

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