View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20691_low_30 (Length: 267)

Name: NF20691_low_30
Description: NF20691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20691_low_30
NF20691_low_30
[»] chr8 (1 HSPs)
chr8 (9-251)||(39854372-39854613)
[»] chr4 (1 HSPs)
chr4 (22-251)||(21955394-21955622)
[»] scaffold0002 (1 HSPs)
scaffold0002 (50-238)||(466625-466812)
[»] chr5 (1 HSPs)
chr5 (50-238)||(35896108-35896295)
[»] chr3 (2 HSPs)
chr3 (50-238)||(52056034-52056221)
chr3 (50-238)||(53575644-53575831)
[»] chr2 (1 HSPs)
chr2 (50-238)||(30200789-30200976)
[»] chr1 (2 HSPs)
chr1 (50-238)||(31353646-31353833)
chr1 (50-238)||(16990933-16991120)
[»] chr7 (1 HSPs)
chr7 (148-250)||(27142992-27143094)


Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 39854372 - 39854613
Alignment:
Q  9 catcatcatatgctaaatcaatttcattgcagtgtaattctgaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggtt 108  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39854372 catcatcatatactaaatcaatttcattgcagtgtaattctgaaacttttcgttgagatgacaacatatgaattgtttcttgcagatgtaaatcatggtt 39854471  T
Q  109 atgctcttccacaaattcatgaaccaccannnnnnncaaccacatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgac 208  Q
    |||||||||||||||||||||||||||||       ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39854472 atgctcttccacaaattcatgaaccacca-ttttttcaaccacatttttaagtcctaatcttgctcgacaattcgttctagtctctagtcttggattgac 39854570  T
Q  209 tgttttatgatcatgtttgtctggctttcgtaaaccttcttta 251  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  39854571 tgttttacgatcatgtttgtctggctttcgtaaaccttcttta 39854613  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 251
Target Start/End: Complemental strand, 21955622 - 21955394
Alignment:
Q  22 taaatcaatttcattgcagtgtaattctgaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccaca 121  Q
    |||||||||||||||||| || |||| ||| |||||||||||||||||||||||||||| | ||| |   |||||||||||||||||||| || ||  ||    
T  21955622 taaatcaatttcattgcaatgaaattttgatactttttgttgagatgacaacatatgaagtgtttgtgatagatgtaaatcatggttatgttcctctgca 21955523  T
Q  122 aattcatgaaccaccannnnnnncaaccacatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatca 221  Q
    |||||||| |||||||        |||||||||||||| ||||  | |||||  |||||| |||  ||||||| || ||||||||| ||||||||  ||     
T  21955522 aattcatgcaccaccaatgttgg-aaccacatttttaagtcctggtgttgctttacaatttgttacagtctctggttttggattgattgttttatattct 21955424  T
Q  222 tgtttgtctggctttcgtaaaccttcttta 251  Q
     ||||||||| ||| |  ||||||||||||    
T  21955423 cgtttgtctgacttccaaaaaccttcttta 21955394  T

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Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 238
Target Start/End: Original strand, 466625 - 466812
Alignment:
Q  50 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 149  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  466625 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 466723  T
Q  150 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcg 238  Q
    ||||| |||| |||||| ||||||  |||||| ||||| |||||||||||||||||   |||||||| |||  | ||||||||||||||    
T  466724 acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcg 466812  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 238
Target Start/End: Complemental strand, 35896295 - 35896108
Alignment:
Q  50 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 149  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  35896295 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 35896197  T
Q  150 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcg 238  Q
    ||||| |||| |||||| ||||||  |||||| ||||| |||||||||||||||||   |||||||| |||  | ||||||||||||||    
T  35896196 acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcg 35896108  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 238
Target Start/End: Original strand, 52056034 - 52056221
Alignment:
Q  50 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 149  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  52056034 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 52056132  T
Q  150 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcg 238  Q
    ||||| |||| |||||| ||||||  |||||| ||||| |||||||||||||||||   |||||||| |||  | ||||||||||||||    
T  52056133 acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcg 52056221  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 238
Target Start/End: Original strand, 53575644 - 53575831
Alignment:
Q  50 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 149  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  53575644 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 53575742  T
Q  150 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcg 238  Q
    ||||| |||| |||||| ||||||  |||||| ||||| |||||||||||||||||   |||||||| |||  | ||||||||||||||    
T  53575743 acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcg 53575831  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 238
Target Start/End: Original strand, 30200789 - 30200976
Alignment:
Q  50 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 149  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  30200789 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 30200887  T
Q  150 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcg 238  Q
    ||||| |||| |||||| ||||||  |||||| ||||| |||||||||||||||||   |||||||| |||  | ||||||||||||||    
T  30200888 acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcg 30200976  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 238
Target Start/End: Complemental strand, 31353833 - 31353646
Alignment:
Q  50 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 149  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  31353833 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 31353735  T
Q  150 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcg 238  Q
    ||||| |||| |||||| ||||||  |||||| ||||| |||||||||||||||||   |||||||| |||  | ||||||||||||||    
T  31353734 acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcg 31353646  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 238
Target Start/End: Complemental strand, 16991120 - 16990933
Alignment:
Q  50 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 149  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  16991120 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 16991022  T
Q  150 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcg 238  Q
    ||||| |||| |||||| |||| |  |||||| ||||| |||||||||||||||||   |||||||| |||  | ||||||||||||||    
T  16991021 acattcttaagtcctaaccttgtttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcg 16990933  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 27143094 - 27142992
Alignment:
Q  148 ccacatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcgtaaaccttc 247  Q
    ||||||| |||| || ||||||||||  |||||| ||||| || |||||||||| |||   ||||||||||||  | |||| |||||||||||  |||||    
T  27143094 ccacattcttaagtcataatcttgcttcacaatttgttctggtttctagtcttgaattctttgttttatgatctcgcttgtttggctttcgtatgccttc 27142995  T
Q  248 ttt 250  Q
    |||    
T  27142994 ttt 27142992  T

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