View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20691_low_4 (Length: 599)
Name: NF20691_low_4
Description: NF20691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20691_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 360 - 581
Target Start/End: Complemental strand, 15871680 - 15871459
Alignment:
| Q |
360 |
gtatttgcttgtcatagtgtttccaaaagacaaaaataacatgagaatgagttgagaccatgttgaaatttttcataatgcttattcacacaagtttccc |
459 |
Q |
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| T |
15871680 |
gtatttgcttgtcatagtgttcccaaaagacaaaaataacatgaaaatgagttgctaccatgttgaaaattttcataatgcttattcacacaagtttccc |
15871581 |
T |
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| Q |
460 |
aataatgtttgcataaaataaaaatgaaaaccacaaattgagaaattggtggactcaaaagcatatagaaccatataatatttgattgaaactaaaactt |
559 |
Q |
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| T |
15871580 |
aataatgtttgcataaaataaaaatgaaaaccacaaattgagaaattggtggactcaaaagcatagagaagcatataatatttgattgaaactaaaactt |
15871481 |
T |
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| Q |
560 |
ctttgtctcaagcatcaaaagt |
581 |
Q |
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| T |
15871480 |
ctttgtctcaagcatcaaaagt |
15871459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 87 - 348
Target Start/End: Complemental strand, 15871987 - 15871728
Alignment:
| Q |
87 |
gtataattgtatgcaagttgagacccagaggctagttaagacaaacgtcaaagctcaaaagaggcacttaattaaagattactttcttacgctctttttc |
186 |
Q |
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| T |
15871987 |
gtataattgtatgcaagttgagactcagaggctagctaagacaaacatcaaagctcaaaagaggtacttgattaaagattactttcttatgctctttttt |
15871888 |
T |
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| Q |
187 |
taagnnnnnnnngtttttgcgagtttggtcctggaggttcatctaggcaggcataaaaactcagaataaggattcatagattacctacaaattatatcct |
286 |
Q |
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| T |
15871887 |
taagaaaaaaa-gtttttgcgagtttggtcctggaggctcatcg-gacaggcataaaaactcagaataaacattcatagattacctacaaattatatcct |
15871790 |
T |
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| Q |
287 |
tacgcgggaagcgatgatgaatccatgaccatgtaaggtatgaatcaattctttatcggtcg |
348 |
Q |
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| T |
15871789 |
tacgcgggaagcgatgatgaatccatgaccatgtgaggtatgaatcaattctttatcggtcg |
15871728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 15872028 - 15871999
Alignment:
| Q |
39 |
tatatttctttcttgtactcttatttgtag |
68 |
Q |
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| T |
15872028 |
tatatttctttcttgtactcttatttgtag |
15871999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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