View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20691_low_9 (Length: 481)
Name: NF20691_low_9
Description: NF20691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20691_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 5e-97; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 36054721 - 36054447
Alignment:
| Q |
15 |
acatgatcatatgttgctttaatttcttcaccnnnnnnncatgtagctttaattttgtaccttggtttggtgattgtgaagaatcataaattaggagaaa |
114 |
Q |
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| T |
36054721 |
acatgatcatatgttgctttaatttcttcaccaaaaaaacatgtagctttaattttgtaccttg-tttggtgattgtgaagaatcataaattaggagaaa |
36054623 |
T |
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| Q |
115 |
gaaagtgttctggccggagcccgcccgtgctactgactatctacatcaacccttggatgtattgattgatatcatatagacattttatgaacttgattaa |
214 |
Q |
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| T |
36054622 |
gaaagtgttctggccggag----cccgtgctaatgactatctacatcaacccttggatgtattgattgata------agacattttatgaacttgattaa |
36054533 |
T |
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| Q |
215 |
nnnnnnnataatatctcgtttacggtctccccgaatataattcaattagtaaggacagttcattgaaatatgtggtggtcgggttca |
301 |
Q |
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| T |
36054532 |
-ttttttataatatctcgtttacggtctccccgagtataattcaattagaaaggacagttcattgaaatatgtggtggtcgggttca |
36054447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 340 - 427
Target Start/End: Complemental strand, 36054439 - 36054352
Alignment:
| Q |
340 |
ttttaatcattaaattatttgacgggaaaacacatgtgatgactatgatttattgtttctttttccctccttcctagtaaaattataa |
427 |
Q |
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| T |
36054439 |
ttttaatcattaagttatttgacgggaaaacatatgtgatgactatgatttattgtttctttttccctccttcctagtaaaattataa |
36054352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 421 - 468
Target Start/End: Complemental strand, 36053956 - 36053909
Alignment:
| Q |
421 |
attataatggctagcttcgaagacaaattggatcccgtcattgtcttc |
468 |
Q |
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| T |
36053956 |
attataatggccagcttcgaagacaaattggatcccgtcattgtcttc |
36053909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 361
Target Start/End: Complemental strand, 17394071 - 17394024
Alignment:
| Q |
314 |
ttcatttattcatcttaaccgtgaaattttaatcattaaattatttga |
361 |
Q |
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| T |
17394071 |
ttcatttattcatcttaaacatgaaattttaaccattatattatttga |
17394024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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