View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20692_high_10 (Length: 404)
Name: NF20692_high_10
Description: NF20692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20692_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Original strand, 3188896 - 3189272
Alignment:
| Q |
16 |
atattaatgagaagaaataattgtttatacttgaagtgcttgaagaaaatcttgctcaagttcaccaagtgatttcttctctttttggtctatgctacaa |
115 |
Q |
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| T |
3188896 |
atattaatgagaagaaataattgtttatacttgaagtgcttgaagaaaatcttgctcaagttcaccaagtgatttcttctctttttggtctatgctacaa |
3188995 |
T |
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| Q |
116 |
tattgtaaaattttactatcaacaacagcatcttcctcaaccttgccagctgaagagggaaggaaacaatgttagaccaatgaaagaaaccaatagtaga |
215 |
Q |
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| T |
3188996 |
tattgtaaaattttactatcaacaacagcatcttcctcaaccttgccagctgaagagggaaggaaacaatgttagaccaatgaaagaaaccaatagtaga |
3189095 |
T |
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| Q |
216 |
tatttttatttttgaaaactcagtatccggcctaaagattgttaatgtcataagataagaccttgttgatcggaggtggccttgggggaaagcaaaaata |
315 |
Q |
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| T |
3189096 |
tatttttatttttgaaaactcagtatccggcctaaagattgttaatgtcataagataagaccttgttgatcggaggtggccttgggggaaagcaaaaata |
3189195 |
T |
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| Q |
316 |
ggccgcggcgaagggatgagtggcggccgctggcattgaaatgaattggaaggactctagaagcagaagtagagaat |
392 |
Q |
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| T |
3189196 |
ggccgcggcgaagggatgagtggcggccgccggcattgaaatgaattggaaggactctagaagcagaagtagagaat |
3189272 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 42461127 - 42461047
Alignment:
| Q |
41 |
tatacttgaagtgcttgaagaaaatcttgctcaagttcaccaagtgatttcttctc---tttttggtctatgctacaatat |
118 |
Q |
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|||||||| |||||||||||||| |||||||| |||||||||| ||||||||||| |||||| ||||||||||||||| |
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| T |
42461127 |
tatacttggagtgcttgaagaaattcttgctcgagttcaccaacggatttcttctcctttttttgatctatgctacaatat |
42461047 |
T |
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