View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20692_high_11 (Length: 370)
Name: NF20692_high_11
Description: NF20692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20692_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 67 - 354
Target Start/End: Original strand, 17068845 - 17069132
Alignment:
| Q |
67 |
tgatcatatcatatttaataaaacagtaaagatccatcaaaagatgaaaagaaagctagactcaccaatatagatgacagtcaaaaaattgcaccaactc |
166 |
Q |
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| T |
17068845 |
tgatcatatcatatttaataaaacagtaacgatccatcaaaagatgaaaagaaagctagactcaccaatatagatgacagtcaaaaaattgcaccaactc |
17068944 |
T |
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| Q |
167 |
ccgatcactgaaccagcccacaaacttacgacaacctagagagcgtttcaactttcaacaattgatcacaaattccaaagacatatacatacaacatttc |
266 |
Q |
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| T |
17068945 |
ccgatcactgaaccagcccacaaacttacgacaacctggagagcgtttcaactttcaacaattgatcacaaattccaaagacatatacatacaacatttc |
17069044 |
T |
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| Q |
267 |
ttgctcactatagaaataaatattttctaaggtacatcaatatctgaaatcaagctataaccttgacactttgaacaataatgttcat |
354 |
Q |
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| T |
17069045 |
ttgctcactatagaaataaatattttctaaggtacatcaatatctgaaatcaagctataaccttgacactttgaacaataatgttcat |
17069132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 17068163 - 17068212
Alignment:
| Q |
20 |
taaagtataacatgaataatcaaccagaagaggaaaaacaacaatgttga |
69 |
Q |
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| T |
17068163 |
taaagtataacatgaataatcaaccagaagaggaaaaacaacaatgttga |
17068212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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