View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20692_high_13 (Length: 349)
Name: NF20692_high_13
Description: NF20692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20692_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 50613774 - 50613460
Alignment:
| Q |
19 |
aaaacttgatatagtgatagaaaatggacatgaagaagtacatgtttggttcaagaagggaagcaaggttaggtaggagctacacaacaaagacaaacta |
118 |
Q |
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| T |
50613774 |
aaaacttgatatagtgatagaaaatggacatgaagaagtacatgtttggttcaagaagggaagcaaggttaggtaggagctacacaacaaagacaaatta |
50613675 |
T |
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| Q |
119 |
tcatagcaatatttcaccaagcaactatgatggcagcnnnnnnncagtatggcagaagatttggaaaaagctaaaaagagataagaagaaagttttcaat |
218 |
Q |
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| T |
50613674 |
tcatagcaatatttcaccaagcaactatgatggtagcaaaaaaacagtatggcagaagatttggaaaaagctaaaaagagataagaagaaagttttcaat |
50613575 |
T |
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| Q |
219 |
tctccttctccttctactatagttgaagatggtgtatcatatgatcaagatacatactcaatgaattttgatcatggaacaggttggatggaaccagata |
318 |
Q |
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| T |
50613574 |
tctccttctccttctactatagttgaagatggtgtatcatatgatcaagatacatactcaatgaattttgatcatggaacaggttggatggaaccagata |
50613475 |
T |
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| Q |
319 |
atctccctcgttcat |
333 |
Q |
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| T |
50613474 |
atctccctcgttcat |
50613460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 331
Target Start/End: Original strand, 1025822 - 1025895
Alignment:
| Q |
258 |
tatgatcaagatacatactcaatgaattttgatcatggaacaggttggatggaaccagataatctccctcgttc |
331 |
Q |
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| T |
1025822 |
tatgatgaagaatcatactcaatgaactttgataaaggaagtgggtggatggagcctgataatctccctcgttc |
1025895 |
T |
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