View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20692_high_14 (Length: 343)
Name: NF20692_high_14
Description: NF20692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20692_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 223901 - 224225
Alignment:
| Q |
1 |
aaaagattgaattcaattcagactctcacaattttttaaggggttaattaagtctttgacataaaatacatgaattaatctcttgaaattttcatactat |
100 |
Q |
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| T |
223901 |
aaaagattgaattcaattcagactctcacaattttttaaggggttaattaagtctttgacataaaatacttcaattaatctct-gaaattttcatactat |
223999 |
T |
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| Q |
101 |
agacaaattagtctttaacttaatatatcagagaaaataatttgtccccaatataaaaatgacatgattaatttgagtttannnnnnnngttaaggactg |
200 |
Q |
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| T |
224000 |
agacaaattagtctttaacttaatatatcagagaaaataatttgtccccaatataaaaatgacatgattaatttgagtttattttttttgttaaggactg |
224099 |
T |
|
| Q |
201 |
ttttgacccacaagaattgaatctacattgaagaataaatggataaggtaattcttttttgacttgaacaaaatatagtatcacannnnnnncaggcctt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
224100 |
ttttgacccacaagaattgaatctacattgaagaataaatggataaggtaattcttttttgacttgaacaaaatatagtatcacatttttttcaggcctt |
224199 |
T |
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| Q |
301 |
ttttccttataacattcattttatag |
326 |
Q |
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|||||||||||||||||||||||||| |
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| T |
224200 |
ttttccttataacattcattttatag |
224225 |
T |
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