View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20692_high_15 (Length: 334)
Name: NF20692_high_15
Description: NF20692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20692_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 42536804 - 42537109
Alignment:
| Q |
19 |
ctaacttctgcacaagtgttggatcaatcttttctcctttccagtcaaatatattaaatgccacagtaggtccacgatgagaatttatttttggcccata |
118 |
Q |
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| T |
42536804 |
ctaacttctgcacaagtgttggatcaatcttttctcctttccagtcaaatatattaaatgccactgtaggtccacgatgagaatttatttttggcccata |
42536903 |
T |
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| Q |
119 |
aattctaattaatgaaaatctattttcatcatgtggatgttgaagactcattaatgcattaacaagccaattaatcaaataccttgttcttgtactaatc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42536904 |
aattctaattaatgaaaatctattttcatcatgtggatgttgaagactcattaatgcattaacaagccaattaatcaaataccttgttcttgtactaatc |
42537003 |
T |
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| Q |
219 |
actattagtcccactgagtctgcgtggtctaatcctctacactcaatttccaatctttcatcattcatgtccatgccttgtagctccacaatttctgatg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42537004 |
actattagtcccactgagtctgcgtggtctaatcctctacactcaatttccaatctttcatcattcatgtccatgccttgtaactccacaatttctgata |
42537103 |
T |
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| Q |
319 |
atgatg |
324 |
Q |
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|||||| |
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| T |
42537104 |
atgatg |
42537109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 222 - 322
Target Start/End: Original strand, 42530893 - 42530992
Alignment:
| Q |
222 |
attagtcccactgagtctgcgtggtctaatcctctacactcaatttccaatctttcatcattcatgtccatgccttgtagctccacaatttctgatgatg |
321 |
Q |
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|||||||||||| ||| ||| ||||||||||||||||| |||||||| ||||||||| ||||||| |||||||||||||||||| ||||| || |||| |
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| T |
42530893 |
attagtcccactaagtttgcatggtctaatcctctacatacaatttcc-atctttcattcttcatgttcatgccttgtagctccacgatttccgacgatg |
42530991 |
T |
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