View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20692_high_21 (Length: 267)
Name: NF20692_high_21
Description: NF20692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20692_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 223576 - 223721
Alignment:
| Q |
1 |
gggaaggatggctttcataaaatgtttagaatctttctccggcgccggtggccggacagagcttctccggcgagcctgcattgtttgttcacttgtgcaa |
100 |
Q |
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| T |
223576 |
gggaaggatggctttcataaaatgtttagaatctttctccggcgccggtggccggacagagcttctccggcgagcctgcattgtttgttcacttgtgca- |
223674 |
T |
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| Q |
101 |
ataataataataaagtgaaatgagtttcaaaggttacttcacattctaa |
149 |
Q |
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| T |
223675 |
--aataataataaagtgaaatgagtttcaaaggttacttcacattctaa |
223721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 218368 - 218448
Alignment:
| Q |
1 |
gggaaggatggctttcataaaatgtttagaatctttctccggcgccggtggccggacagagcttctccggcgagcctgcat |
81 |
Q |
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| T |
218368 |
gggaaggatggctttcataaaatgtttagaatccttctccgccaccggtggccggacagagcttctccggcgagcctgcat |
218448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 199215 - 199291
Alignment:
| Q |
8 |
atggctttcataaaatgtttagaatctttctccggcgccggtggccggacagagcttctccggcgagcctgcattgt |
84 |
Q |
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| T |
199215 |
atggctttcataaaatgcttcgatgctttctccggcgccggtgaccggccacatcttctccggtgaggctgcattgt |
199291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 249
Target Start/End: Original strand, 223827 - 223862
Alignment:
| Q |
214 |
gattgatatactcaataaaaaataattaaaagaaga |
249 |
Q |
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| T |
223827 |
gattgatatactcaataaaaaataattaaaagaaga |
223862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 212309 - 212354
Alignment:
| Q |
2 |
ggaaggatggctttcataaaatgtttagaatctttctccggcgccg |
47 |
Q |
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||||| ||||||||||||||||| || ||||||||||||| ||||| |
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| T |
212309 |
ggaagtatggctttcataaaatgctttgaatctttctccgccgccg |
212354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 3809355 - 3809431
Alignment:
| Q |
8 |
atggctttcataaaatgtttagaat-ctttctccggcgccggtggccggacagagcttctccggcgagcctgcattg |
83 |
Q |
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|||||||||| ||||||||| || | | |||||||||||| || | ||||||| ||||||||||||| |||||||| |
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| T |
3809355 |
atggctttcagaaaatgttttgattaccttctccggcgccaatgactggacagaccttctccggcgaggctgcattg |
3809431 |
T |
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