View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20692_high_28 (Length: 240)
Name: NF20692_high_28
Description: NF20692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20692_high_28 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 33345657 - 33345435
Alignment:
| Q |
18 |
catagatgaggaaagaagaaaccaagttattgaaaaaattcacgaaacagctattagaataactaaaacccgaggtgtcaagctcactgagtttcatatc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33345657 |
catagatgaggaaagaagaaaccaagttattgaaaaaattcacgaaacagcaattagaataactaaaacccgaggtgtcaagctcactgagtttcatatc |
33345558 |
T |
|
| Q |
118 |
atcaatcaggatccaccggccctatctgatgaagcagtcgtcaacgcaatggaaactgcaacaaaagagttaaacttgacgagcaagttgatgattagta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33345557 |
atcaatcaggatccaccggccctatctgatgaagcagtcgtcaacgcaatggaaactgcaacaaaagagttaaacttgacgagcaagttgatgattagta |
33345458 |
T |
|
| Q |
218 |
gagcctatcatgactctttgttt |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
33345457 |
gagcctatcatgactctttgttt |
33345435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University