View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20692_high_5 (Length: 481)
Name: NF20692_high_5
Description: NF20692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20692_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 114 - 467
Target Start/End: Original strand, 29001917 - 29002267
Alignment:
| Q |
114 |
gttgtttatgtcaaagactctgaattgttctgtgacgaattcatcactcacccatcacagaaaaaatgcagcaaggaggactattattccttgacagatt |
213 |
Q |
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| T |
29001917 |
gttgttgatgtcaaagactctgaattgttctgtgacgaattcatcactcacccatcacagaaaaaatgcagcaaggaggactatt---ccttgacagatt |
29002013 |
T |
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| Q |
214 |
ctgatgataaagttaaagactttgaattgttcttcaacaaattcatcactgatccaatacaggaaaaacgctgcaacgattataactccccggattccag |
313 |
Q |
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| T |
29002014 |
ctgatgataaagttaaagactttgaattgttcttcaacaaattcatcactgatccaatacaggaaaaacgctgcaacgattataactccccggattccgg |
29002113 |
T |
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| Q |
314 |
cgataaaggtgatgatgacagtttggaagcaacatggaaagctataatggaaggacaggagaaaacaaagaagccatatctaaagaaaagtgacacttgg |
413 |
Q |
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| T |
29002114 |
cgataaaggtgatgatgacagtttggaagcaacatggaaagctataatggaaggacaagagaaaacaaagaagccatatctaaagaaaagtgacacttgg |
29002213 |
T |
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| Q |
414 |
actgcaaggattgtgaaagcagaaccatttcgtaacaatggtggttgtggtttt |
467 |
Q |
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| T |
29002214 |
actgcaaggattgtgaaagccgaaccatttcgtaacaatggtggttgtggtttt |
29002267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 203 - 459
Target Start/End: Original strand, 28962280 - 28962536
Alignment:
| Q |
203 |
cttgacagattctgatgataaagttaaagactttgaattgttcttcaacaaattcatcactgatccaatacaggaaaaacgctgcaacgattataactcc |
302 |
Q |
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| T |
28962280 |
cttgccagattctgacgacaaagttaaagacttcagattattctgcaacaaattcatcgatgatccatcaccggaaaaatgttgcaacgattataacttg |
28962379 |
T |
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| Q |
303 |
ccggattccagcgataaaggtgatgatgacagtttggaagcaacatggaaagctataatggaaggacaggagaaaacaaagaagccatatctaaagaaaa |
402 |
Q |
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| T |
28962380 |
ccggactcaggtgataaaggtgatgatgacagtttagaagcaacatggaaagcaataatggaagcacaggagaaaacaaagaagccacatctgaagaaaa |
28962479 |
T |
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| Q |
403 |
gtgacacttggactgcaaggattgtgaaagcagaaccatttcgtaacaatggtggtt |
459 |
Q |
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| T |
28962480 |
gtggcacttggactgcaaggattgtgaaagcagaaccatttcgtaacaatggcggtt |
28962536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 29001825 - 29001863
Alignment:
| Q |
22 |
atccaattgagcaagaaaaccaaaccaatgaaccacatc |
60 |
Q |
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| T |
29001825 |
atccaattgagcaagaaaaccaaaccaatgaaccacatc |
29001863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 28962113 - 28962149
Alignment:
| Q |
24 |
ccaattgagcaagaaaaccaaaccaatgaaccacatc |
60 |
Q |
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| T |
28962113 |
ccaattgagctagaaaaccaaaccaatgaaccacatc |
28962149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 28962206 - 28962262
Alignment:
| Q |
225 |
gttaaagactttgaattgttcttcaacaaattcatcactgatccaatacaggaaaaa |
281 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||||| || | ||||||| |
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| T |
28962206 |
gttaaagactctgaattgttccacaacaaattcatcactgatccgattccggaaaaa |
28962262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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