View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20692_low_1 (Length: 719)
Name: NF20692_low_1
Description: NF20692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20692_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 349 - 701
Target Start/End: Complemental strand, 14739010 - 14738658
Alignment:
| Q |
349 |
aaaatgattattaataagagtgtttcattagctacacattcataataaccattatagtgcccaacaaacactgttgcaatcctaagtataagccaaattt |
448 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14739010 |
aaaatgattattaataagagtgtttcattagctacacattcataataaccattatagtgcccaacaaacactgttgcaatcctaagtataagccaaattt |
14738911 |
T |
|
| Q |
449 |
ccaatttttctgatgggaataattacgtaaaagtaacacaagtttatttaccacaagtacttttgaacttttcttgtaataatgatgatgtagtaaaata |
548 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14738910 |
ccaatttttctgatgggaataattacgtaaaagtaacacaagtttatttaccacaagtacttttgaacttttcttgtaataatgaggatgtagtaaaata |
14738811 |
T |
|
| Q |
549 |
aatactcctgaagaaaacgggaacttatttttactgtcacacgctggtaataatgaggatatagtataaatgatggctagggttttatttattaacatga |
648 |
Q |
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| T |
14738810 |
aatactcctgaagaaaacgggaacttattttcactgtcacacgctggtaataatgaggatatagtataaatgatgactagggttttatttattaacatga |
14738711 |
T |
|
| Q |
649 |
gtgtttcattagctacgcaacaaacacttttccaaccctattcatttgcatag |
701 |
Q |
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| T |
14738710 |
gtgtttcattagctacgcaacaaacactttttcaaccctattcatttgcatag |
14738658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 11 - 363
Target Start/End: Complemental strand, 14739390 - 14739030
Alignment:
| Q |
11 |
cagagacaagcatgagttcatattttttagggatggtgtctgaaacataccaacaacccccc-tcnnnnnnnnaaatggtgtataaaccgaccgccaaca |
109 |
Q |
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| T |
14739390 |
cagagacaagcatgagctcatcttttttagcgatggtgtctgaaacgtaccaacaaccccccctcttttttttaaatggtgtataaaccgaccgccaaca |
14739291 |
T |
|
| Q |
110 |
cagacgggt-catggaccaactgcccctgcaaaaaacagcaagcatcatggcac----------aacaaactctcaccgcaacgaacaactgcaaatagt |
198 |
Q |
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| T |
14739290 |
cagacgggttcatggaccaactgcccctgcaaaaaacagcaagcatcatggccctttcgagcgcaacaaactctcaccgcaacgaacagctgcaaatagt |
14739191 |
T |
|
| Q |
199 |
cttagcaagaacaaaatcagtggaacgatgacagatctcaccccaaaagccacgaaagctgcagatctcaacagatctgaacaaatcagaaatcagacaa |
298 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
14739190 |
cttagcaagaacaaaaccagtggaacgatgacag----caccccaaaagccacgaaagctgcatatctcaacagatctgaacaaatcagaaatcaggtaa |
14739095 |
T |
|
| Q |
299 |
gcaatcaccaaaccaaagttttagggaccttagttttagtgttacactcaaaaatgattattaat |
363 |
Q |
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| T |
14739094 |
gcaatcaccaaaccaaagttttagggaccttagttttagtgttacactcaaaaatgattattaat |
14739030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 436 - 588
Target Start/End: Complemental strand, 14744932 - 14744779
Alignment:
| Q |
436 |
ataagccaaatttccaatttttctgatgggaataattacgtaaaagtaacacaagtttatttaccacaagtacttttgaacttttcttgtaataatgatg |
535 |
Q |
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||||| ||| |||||||| |||| ||| ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
14744932 |
ataagacaattttccaatatttcggataggagtaattacgtaaaagtaacacaggtttatttactacaagtacttttgaacttttcttgtaataatgagg |
14744833 |
T |
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| Q |
536 |
atgtagt-aaaataaatactcctgaagaaaacgggaacttatttttactgtcac |
588 |
Q |
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| T |
14744832 |
atgtagtaaaaatcaatactcgcgagtaaaacgggaccttattttcgctgtcac |
14744779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 322 - 393
Target Start/End: Complemental strand, 14745006 - 14744929
Alignment:
| Q |
322 |
gggaccttagttttagtgttacactca------aaaatgattattaataagagtgtttcattagctacacattcataa |
393 |
Q |
| |
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||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14745006 |
gggaccttagttttagtgttacacttacactagaaaatgattattaataagagtgtttcattagctacacattcataa |
14744929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 90 - 294
Target Start/End: Complemental strand, 11853990 - 11853777
Alignment:
| Q |
90 |
gtataaaccgaccgccaacacagacgggt-catggaccaactgcccctgcaa--aaaacagcaagcatcatggc----------acaacaaactctcacc |
176 |
Q |
| |
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|||| ||||||||| |||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||| |||||||| | | ||| |
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| T |
11853990 |
gtatgaaccgaccgtcaacacagacaggttcatggaccaactgcccctgcaacaaaaacagcaagcatcatggccctttcgagcacaacaaattatgacc |
11853891 |
T |
|
| Q |
177 |
gcaacgaacaactgcaaatagtcttagcaagaacaaaatcagtggaacgatgacagatctcaccccaaaagccacgaaagctgcagatctcaacagatct |
276 |
Q |
| |
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| || ||||| |||| | |||||| | || |||||||||||||||||| ||| || || |||||| ||||||||||||||||||||||||||||| |
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| T |
11853890 |
gtaaagaacagctgcgacgagtcttggtaacaacaaaatcagtggaacggtgatag----caacccaaattccacgaaagctgcagatctcaacagatct |
11853795 |
T |
|
| Q |
277 |
gaacaaatcagaaatcag |
294 |
Q |
| |
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| |||||| ||||||||| |
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| T |
11853794 |
gtacaaattagaaatcag |
11853777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 290
Target Start/End: Complemental strand, 38191030 - 38190944
Alignment:
| Q |
200 |
ttagcaagaacaaaatcagtggaacgatgacagatctcaccccaaaagccacgaaagctgcagatctcaacagatctgaacaaatcagaaa |
290 |
Q |
| |
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||||||| ||||||| |||| ||||| |||||| || |||||| |||||||||||| | |||||||||||| || |||||||||||| |
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| T |
38191030 |
ttagcaacaacaaaaccagtagaacggtgacag----cagcccaaattccacgaaagctgtaaatctcaacagatatggacaaatcagaaa |
38190944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 160
Target Start/End: Complemental strand, 38191123 - 38191079
Alignment:
| Q |
118 |
tcatggaccaactgcccctgcaa--aaaacagcaagcatcatggc |
160 |
Q |
| |
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|||||||||||||| |||||||| |||||||||||||||||||| |
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|
| T |
38191123 |
tcatggaccaactgtccctgcaacaaaaacagcaagcatcatggc |
38191079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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