View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20692_low_16 (Length: 330)
Name: NF20692_low_16
Description: NF20692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20692_low_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 42449862 - 42450166
Alignment:
| Q |
18 |
atctctttattgttggacccttaccttttgttaacttccccattggagttgggaataagaacaatatagtcttcttcagcaaaggtgataaagaactagt |
117 |
Q |
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| T |
42449862 |
atctctttattgttggacccttaccttttgttaacttccccattggagttgggaataagaacaatatagtcttcttcagcaaaggtgataaagaactagt |
42449961 |
T |
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| Q |
118 |
ctgggttgatttaaggactcaaatgattgagaagcttggtgttaaaggagacaaatttgattgtcacataggaaagtacaagaaaagctttcttccgatc |
217 |
Q |
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| T |
42449962 |
ctgggttgatttaaggactcaaatgattgagaagcttggtgttaaaggagacaaatttgattgtcacataggaaagtacaagaaaagctttcttccgatc |
42450061 |
T |
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| Q |
218 |
aaaggaataaataattaattgttttcgctcgaggtatgtgattcaatattaggattttaacttgtatatatatgttcgaacttcataacactctgtatga |
317 |
Q |
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| T |
42450062 |
aaagg--------atgaattgttttcgctcgaggtatgtgattcgatattaggattttaacttgtatatatatgttcgaacttcattacactctgtatga |
42450153 |
T |
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| Q |
318 |
attgtttacgcct |
330 |
Q |
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| T |
42450154 |
attgtttacgcct |
42450166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 56 - 243
Target Start/End: Original strand, 42262482 - 42262669
Alignment:
| Q |
56 |
cccattggagttgggaataagaacaatatagtcttcttcagcaaaggtgataaagaactagtctgggttgatttaaggactcaaatgattgagaagcttg |
155 |
Q |
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| T |
42262482 |
cccataggacttggtaagaagaataatatagtcttcttaaacaaaagagataataaaatagtttgggttgatttgaaaactcagatgattgaagagcttg |
42262581 |
T |
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| Q |
156 |
gtgttaaaggagacaaatttgattgtcacataggaaagtacaagaaaagctttcttccgatcaaaggaataaataattaattgttttc |
243 |
Q |
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| T |
42262582 |
gtgttgaaggagacaaatttcgttgtcatataggaaagtacaagaaaagctttcttccgattgaaggaataaatacgtagttgttttc |
42262669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 39720845 - 39720788
Alignment:
| Q |
185 |
ataggaaagtacaagaaaagctttcttccgatcaaaggaataaataattaattgtttt |
242 |
Q |
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| T |
39720845 |
ataggaaagtacaaaaaaagctttcttccaataggaggaatgaataattaattttttt |
39720788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 16921107 - 16921189
Alignment:
| Q |
89 |
ttcttcagcaaaggtgataaagaactagtctgggttgatttaaggactcaaatgattgagaagcttggtgttaaaggagacaa |
171 |
Q |
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| T |
16921107 |
ttcttcagaaaagatgataatgaaatagtctggtttgatttgaatacccaaatgattgaagagcttggtgttaaaggaaacaa |
16921189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 29124292 - 29124352
Alignment:
| Q |
104 |
gataaagaactagtctgggttgatttaaggactcaaatgattgagaagcttggtgttaaag |
164 |
Q |
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| T |
29124292 |
gataaagaactagcttggtttgatttgagtacccaaatgattgaggagcttggttttaaag |
29124352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 29137426 - 29137486
Alignment:
| Q |
104 |
gataaagaactagtctgggttgatttaaggactcaaatgattgagaagcttggtgttaaag |
164 |
Q |
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| T |
29137426 |
gataaagaactagcttggtttgatttaagtacccaaatgatcgaggagcttggttttaaag |
29137486 |
T |
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