View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20692_low_17 (Length: 324)
Name: NF20692_low_17
Description: NF20692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20692_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 24304873 - 24305140
Alignment:
| Q |
18 |
agtatcaaggtgtttgttgatgagaataaaatggattataattctctcgcccacatcatgattttcttgaaattttatcatattatttcttatatttaaa |
117 |
Q |
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| T |
24304873 |
agtatcaaggtgtttgttgatgagaataaaatggattataattctctcgcccacatcatgattttcttgaaattttatcatattatttcttatatttaaa |
24304972 |
T |
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| Q |
118 |
tagggtttaaggcttcaatattgtaacatcgatgcagaataattggtcttcatttatttcattggatcttgagaaagtattacatatattattttattac |
217 |
Q |
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| T |
24304973 |
tagggtttaaggcttcaatattgtaacatcgatgctgaataattggtcttcatttatttcattggatcttgagaaaatattacatatattattttattac |
24305072 |
T |
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| Q |
218 |
gaggataattgtaagacctttaagaagtcaaaataattaattttggatgataacattaagttattatt |
285 |
Q |
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| T |
24305073 |
gaggataattgtaagacctttaagaagtcaaaataatttattttggatgatgacattaagttattatt |
24305140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 24754997 - 24755049
Alignment:
| Q |
179 |
ttggatcttgagaaagtattacatatattattttattacgaggataattgtaa |
231 |
Q |
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| T |
24754997 |
ttggatcttgagaaaatattacatattttattttattatgaggatatttgtaa |
24755049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 12373858 - 12373908
Alignment:
| Q |
182 |
gatcttgagaaagtattacatatattattttattacgaggataattgtaag |
232 |
Q |
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| T |
12373858 |
gatcttgagaaaaaattacatattttattttattttgaggataattgtaag |
12373908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 12333114 - 12333167
Alignment:
| Q |
179 |
ttggatcttgagaaagtattacatatattattttattacgaggataattgtaag |
232 |
Q |
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| T |
12333114 |
ttggatcttgagaaaacattacatattttattttattgtgaggataattataag |
12333167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 24760461 - 24760514
Alignment:
| Q |
179 |
ttggatcttgagaaagtattacatatattattttattacgaggataattgtaag |
232 |
Q |
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| T |
24760461 |
ttggatcttgagaaaatattacatattttattttcttatgaaaataattgtaag |
24760514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 24843842 - 24843879
Alignment:
| Q |
195 |
tattacatatattattttattacgaggataattgtaag |
232 |
Q |
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| T |
24843842 |
tattacatattttattttattatgaggataattgtaag |
24843879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 16652595 - 16652639
Alignment:
| Q |
190 |
gaaagtattacatatattattttattacgaggataattgtaagac |
234 |
Q |
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|||| |||||||||| ||||||||||| || |||||||||||||| |
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| T |
16652595 |
gaaaatattacatattttattttattatgaagataattgtaagac |
16652639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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