View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20692_low_18 (Length: 313)
Name: NF20692_low_18
Description: NF20692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20692_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 24 - 304
Target Start/End: Original strand, 43408095 - 43408375
Alignment:
| Q |
24 |
aatggaatgcactgctccagcagcaaatcatgatgatcagcaggaaagtggttttgttgttgggaagagatggtggattgggcctagggcaaatccaggt |
123 |
Q |
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| T |
43408095 |
aatggaatgcactgctccagcagcaaatcatgatgatcagcaggaaagtggttttgttgttgggaagagatggtggattgggcctagggcaaatccaggt |
43408194 |
T |
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| Q |
124 |
ccaacaacatctgtcaaagaaagattagtggttgctgttggttacttaaaagagtacacaaagaactcatccaacaacgtccttattcagatatgggtac |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43408195 |
ccaacaacatctgtcaaagaaagattagtggttgctgttggttacttaaaagagtacacaaagaactcatccaacaacgtccttattcagatatgggtac |
43408294 |
T |
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| Q |
224 |
ctatgaggaggagatcagccctaattcacactcaaaaccactaccttcagcaggagtcatcatctgcacctgtttctgtga |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43408295 |
ctatgaggaggagatcagccctaattcacactcaaaaccactaccttcagcaggagtcatcatctgcacctgtttctgtga |
43408375 |
T |
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