View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20692_low_19 (Length: 310)

Name: NF20692_low_19
Description: NF20692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20692_low_19
NF20692_low_19
[»] chr3 (3 HSPs)
chr3 (3-301)||(24594923-24595221)
chr3 (5-301)||(51308506-51308803)
chr3 (231-298)||(20871255-20871322)
[»] chr4 (3 HSPs)
chr4 (5-301)||(55849578-55849869)
chr4 (236-284)||(15040083-15040130)
chr4 (236-284)||(15114294-15114341)
[»] chr8 (5 HSPs)
chr8 (216-301)||(4678002-4678087)
chr8 (222-289)||(19472664-19472731)
chr8 (222-289)||(19543589-19543656)
chr8 (222-289)||(19589040-19589107)
chr8 (229-289)||(3785972-3786032)
[»] chr1 (3 HSPs)
chr1 (231-301)||(20225649-20225719)
chr1 (215-289)||(12685012-12685086)
chr1 (216-288)||(16385467-16385540)
[»] chr7 (1 HSPs)
chr7 (216-289)||(26389086-26389160)


Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 3 - 301
Target Start/End: Original strand, 24594923 - 24595221
Alignment:
Q  3 cgttctagtttacaagtggtttattggatttacatatcattggcactgccctattttggaatagttgttgatactatcctgctaaatgtttgagttttca 102  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  24594923 cgttctagtttgcaagtggtttattggatttacatatcattggcactgccctattttggaatagttgttgatactatcctgctgaatgtttgagttttct 24595022  T
Q  103 tttggcatatggatgttgtggagacactgtaggaagcttgtgaggacccaaaagtttggtcaacgacttctaggagctctgcacctcaacttgtcatatt 202  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24595023 tttggcatatggatgttgcagagacactgtaggaagcttgtgaggacccaaaagtttggtcaacgacttctaggagctatgcacctcaacttgtcatatt 24595122  T
Q  203 tctttgcactttatttctttgtttgctgttagctttgtaattcaaacttaagctaagagttctcttaccttgagtttgagggaggctattaagaataat 301  Q
    | | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24595123 tttctgcactttatttctttgtttgctgttagctttgtaattcaaactcaagctaagagttatcttaccttgagtttgagggaggctattaagaataat 24595221  T

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Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 301
Target Start/End: Original strand, 51308506 - 51308803
Alignment:
Q  5 ttctagtttacaagtggtttattggatttacatatcattggcactgccctattttggaatagttgttgatactatcctgctaaatgtttgagttttcatt 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||    
T  51308506 ttctagtttactagtggtttattggatttacatatcattggcactgccctattttggaatagttgttgatactatcctgctgaatatttgagttttcttt 51308605  T
Q  105 tggcatatggatgttgtggagacactgtaggaagcttgtgaggacccaaaagtttggtcaacgacttctaggagctctgcacctcaacttgtcatatttc 204  Q
    |||||||||||||||| ||||||  ||||||||||||| ||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||       
T  51308606 tggcatatggatgttgcggagacgttgtaggaagcttgcgaggacccaaaag-ttggtcaacggcttctaggagctatgcacctcaacttgtcatatact 51308704  T
Q  205 tttgcactttatttctt-tgtttgctgtt-agctttgtaattcaaacttaagctaagagttctcttaccttgagtttgagggaggctattaagaataat 301  Q
    | ||||||||||||||| ||||||||||| ||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  51308705 tctgcactttatttcttctgtttgctgttaagctttgtagttcaaactcaagttaagagttctcttaccttgagtttgagggaggctattaagaataat 51308803  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 20871255 - 20871322
Alignment:
Q  231 ttagctttgtaattcaaacttaagctaagagttctcttaccttgagtttgagggaggctattaagaat 298  Q
    ||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||| ||||||||||    
T  20871255 ttagctttgtaatccaaactcaagttaagagttctcttaccttgagtttgagggagggtattaagaat 20871322  T

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Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 301
Target Start/End: Complemental strand, 55849869 - 55849578
Alignment:
Q  5 ttctagtttacaagtggtttattggatttacatatcattggcactgccctattttggaatagttgttgatactatcctgctaaatgtttgagttttcatt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||       
T  55849869 ttctagtttacaagtggtttattggatttacatatcattggcactgccctattttggaatagttgttgatactatcctgctgaatgtttgtgttttc--- 55849773  T
Q  105 tggcatatggatgttgtggagacactgtaggaagcttgtgaggacccaaaagtttggtcaacgacttctaggagctctgcacctcaacttgtcatatttc 204  Q
      |||||||||||||| |||||| |||||||||||||| ||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||       
T  55849772 --gcatatggatgttgcggagacgctgtaggaagcttgcgaggacccaaaag-ttggtcaacgacttcgaggagctatgcacctcaacttgtcatatact 55849676  T
Q  205 tttgcactttatttctt-tgtttgctgttagctttgtaattcaaacttaagctaagagttctcttaccttgagtttgagggaggctattaagaataat 301  Q
    | ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  55849675 tctgcactttatttcttctgtttgctgttagctttgtaattcaaactcaagctaagagttatcttaccttgagtttgagggaggctattaagaataat 55849578  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 15040130 - 15040083
Alignment:
Q  236 tttgtaattcaaacttaagctaagagttctcttaccttgagtttgaggg 284  Q
    |||||| |||||||| |||| |||| |||||||||||||||||||||||    
T  15040130 tttgtatttcaaactcaagc-aagaattctcttaccttgagtttgaggg 15040083  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 15114294 - 15114341
Alignment:
Q  236 tttgtaattcaaacttaagctaagagttctcttaccttgagtttgaggg 284  Q
    |||||| |||||||| |||| |||| |||||||||||||||||||||||    
T  15114294 tttgtatttcaaactcaagc-aagaattctcttaccttgagtttgaggg 15114341  T

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Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 4678002 - 4678087
Alignment:
Q  216 tttctttgtttgctgttagctttgtaattcaaacttaagctaagagttctcttaccttgagtttgagggaggctattaagaataat 301  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4678002 tttctttgtttgctgttagctttgtaattcaaattcaagctaagagttctcttaccttgagtttgagggaggctattaagaataat 4678087  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 19472731 - 19472664
Alignment:
Q  222 tgtttgctgttagctttgtaattcaaacttaagctaagagttctcttaccttgagtttgagggaggct 289  Q
    |||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19472731 tgtttggtgtttgctttgtaattcaaactcaagctaagagttctcttaccttgagtttgagggaggct 19472664  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 19543656 - 19543589
Alignment:
Q  222 tgtttgctgttagctttgtaattcaaacttaagctaagagttctcttaccttgagtttgagggaggct 289  Q
    |||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19543656 tgtttggtgtttgctttgtaattcaaactcaagctaagagttctcttaccttgagtttgagggaggct 19543589  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 19589040 - 19589107
Alignment:
Q  222 tgtttgctgttagctttgtaattcaaacttaagctaagagttctcttaccttgagtttgagggaggct 289  Q
    |||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19589040 tgtttggtgtttgctttgtaattcaaactcaagctaagagttctcttaccttgagtttgagggaggct 19589107  T

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Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 3786032 - 3785972
Alignment:
Q  229 tgttagctttgtaattcaaacttaagctaagagttctcttaccttgagtttgagggaggct 289  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||    
T  3786032 tgttagctttgtaattcaaactcaagctaagagttctctttccttgagtttgaggaaggct 3785972  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 231 - 301
Target Start/End: Complemental strand, 20225719 - 20225649
Alignment:
Q  231 ttagctttgtaattcaaacttaagctaagagttctcttaccttgagtttgagggaggctattaagaataat 301  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  20225719 ttagctttgtaattcaaactcaatctaagagttctcttaccttgagtttgagggaggctattaagaataat 20225649  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 12685012 - 12685086
Alignment:
Q  215 atttctttgtttgctgttagctttgtaattcaaacttaagctaagagttctcttaccttgagtttgagggaggct 289  Q
    |||| |||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  12685012 atttttttgtttggtgttagctttgtaattcaaactcaagttaagagttctcttaccttgagtttgagggaggct 12685086  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 288
Target Start/End: Original strand, 16385467 - 16385540
Alignment:
Q  216 tttctttgtttgctgttagcttt-gtaattcaaacttaagctaagagttctcttaccttgagtttgagggaggc 288  Q
    ||||| || ||| |||||||||| |||||||||||| ||| ||| |||| ||||||||||||||||| ||||||    
T  16385467 tttctctggttgatgttagcttttgtaattcaaactcaagttaatagttatcttaccttgagtttgatggaggc 16385540  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 289
Target Start/End: Original strand, 26389086 - 26389160
Alignment:
Q  216 tttctttgtttg-ctgttagctttgtaattcaaacttaagctaagagttctcttaccttgagtttgagggaggct 289  Q
    |||||||||||| || ||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||    
T  26389086 tttctttgtttgacttttagctttgtaatccatactcaagctaagagttctcttaccttgagtttgagggaggct 26389160  T

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