View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20692_low_2 (Length: 640)
Name: NF20692_low_2
Description: NF20692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20692_low_2 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 571; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 1 - 623
Target Start/End: Original strand, 31940169 - 31940792
Alignment:
| Q |
1 |
ctttccagattttagatgcactctttcaacagaggggtcccattccaccnnnnnnnctttaacaagcactcccttgaggtccctgaagtttgccccctaa |
100 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31940169 |
ctttccagattttagatacactctttcaacagaggggtcccattccacctttttttctttaacaagcactcccttgaggtccctgaagtttgccccctaa |
31940268 |
T |
|
| Q |
101 |
aagggcaagcaagcacaattaaaatttacatagagcaacaaagataaaataatagtactacataatatcaattcaagatacggtaccttcttctttggaa |
200 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31940269 |
aaaggcaagcaagcacaattaaaatttacatagagcaacaaagataaaatgacagtactacataatatcaattcaagatacggtaccttcttctttggaa |
31940368 |
T |
|
| Q |
201 |
tgtggcaaactctctcatagtcatcggtatttaatttcaaaggcctgtgatcatacagcataccacttggtgcactatgatagtcagcagaataattcgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31940369 |
tgtggcaaactctctcatagtcatcggtatttaatttcaaaggcctgtgatcatacagcataccacttggtgcactatgatagtcagcagaataattcgc |
31940468 |
T |
|
| Q |
301 |
catctctggagtagaaaacacaagattcaacaccagttcagtttactgatgaaggaagcaagacagattttctaaccatatgacatgtaacaacatgcaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31940469 |
catctctggagtagaaaacacaagattcaacaccagttcagtttactgatgaaggaagcaagacagattttctaaccatatgacatgtaacaacatgcaa |
31940568 |
T |
|
| Q |
401 |
tgaccacatacacaattctagttataaaaaagaccagagtgagacaaaatgcagttcatatatatgcagccagtacattttagctgataaatagagattg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31940569 |
tgaccacatacacaattctagttataaaaaagaccagagtgagacaaaatgcagttcatatatatgcagccagtacattttagctgataagtagagattg |
31940668 |
T |
|
| Q |
501 |
tgtgaatcttactctaggtaagcttgatatttagcatgaacacattgaaatataaaacattcattcat-aaaaaactgctgacatctttcattgcaatga |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
31940669 |
tgtgaatcttactctaggtaagcttgatatttagtatgaacacattgaaatataaaacattcattcataaaaaaactgctgacatctttcattgcaatga |
31940768 |
T |
|
| Q |
600 |
caacagagtactaaaaaagcaaac |
623 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
31940769 |
caacagagtactaaaaaagcaaac |
31940792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 175 - 307
Target Start/End: Original strand, 13536880 - 13537012
Alignment:
| Q |
175 |
aagatacggtaccttcttctttggaatgtggcaaactctctcatagtcatcggtatttaatttcaaaggcctgtgatcatacagcataccacttggtgca |
274 |
Q |
| |
|
|||||| || |||||||| | |||||||||||| ||||||||||| ||||| | ||||||| ||| || ||||||||| ||||| |||||||||| |
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|
| T |
13536880 |
aagatagggaaccttcttgtgtggaatgtggcagactctctcataatcatctttgtttaattccaatgggaagtgatcatatagcattccacttggtgtg |
13536979 |
T |
|
| Q |
275 |
ctatgatagtcagcagaataattcgccatctct |
307 |
Q |
| |
|
| | ||||||||| ||||||||| |||||||| |
|
|
| T |
13536980 |
ttttcatagtcagctgaataattcaccatctct |
13537012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 623
Target Start/End: Original strand, 9390521 - 9391129
Alignment:
| Q |
1 |
ctttccagattttagatgcactctttcaacagaggggtcccattccaccnnnnnnnctttaacaagcactcccttgaggtccctgaagtttgccccctaa |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9390521 |
ctttccagattttagatacactctttcaactgaggggtcccattccaccttgttttctttaacaagcactcccttgaggtccctgaagtttgccccctaa |
9390620 |
T |
|
| Q |
101 |
aagggcaagcaagcacaattaaaatttacatagagcaacaaagataaaataatagtactacataatatcaattcaagatacggtaccttcttctttggaa |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
9390621 |
aaaggcaagcaagcacaattaaaatttacata----------------ataacagtac---ataatatcaattcaagatatgataccttcttctttggaa |
9390701 |
T |
|
| Q |
201 |
tgtggcaaactctctcatagtcatcggtatttaatttcaaaggcctgtgatcatacagcataccacttggtgcactatgatagtcagcagaataattcgc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||| | |
|
|
| T |
9390702 |
tgtggcaaactctctcatagtcatcggtatttaatttcaaaggtctgtgatcatacagcataccacttggtgcactttgagagtcagcagaataattcac |
9390801 |
T |
|
| Q |
301 |
catctctggagtagaaaacacaagattcaacaccagttcagtttactgatgaaggaagcaagacagattttctaaccatat-----gacatgtaacaaca |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| | ||||||||||| || |
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|
| T |
9390802 |
catctctggagtagaaaacacaagattcaacaccagttcagcttaatgatgaaggaagcaagacagattttctaaccatgtaatgtgacatgtaacatca |
9390901 |
T |
|
| Q |
396 |
tgcaatgaccacatacacaattctagttataaaaaagaccagagtgagacaaaatgcagttcatatatatgcagccagtacattttagctgataaataga |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9390902 |
tgcaatgaccacatacacaattctagttataaaaaagaccagagtgtgacaaaatgcagttcatatatatgcagccagtacattttagctgataaataga |
9391001 |
T |
|
| Q |
496 |
gattgtgtgaatcttactctaggtaagcttgatatttagcatgaacacattgaaatataaaacattcattcataaaaaactgctgacatctttcattgca |
595 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9391002 |
gattgtatgaatcttactctaggtaagcttgatatttagtatgaacacattgaaatataaaacattcattcataaaaaactgctgacatctttcattgca |
9391101 |
T |
|
| Q |
596 |
atgacaacagagtactaaaaaagcaaac |
623 |
Q |
| |
|
||||||||||||||||||||| |||||| |
|
|
| T |
9391102 |
atgacaacagagtactaaaaatgcaaac |
9391129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 5 - 601
Target Start/End: Original strand, 1338360 - 1338939
Alignment:
| Q |
5 |
ccagattttagatgcactctttcaacagaggggtcccattccaccnnnnnnnctttaacaagcactcccttgaggtccctgaagtttgccccctaaaagg |
104 |
Q |
| |
|
||||||||||||| |||||||| || ||| ||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||| | |
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|
| T |
1338360 |
ccagattttagatacactcttttaaaagacgggtcccattccaccttattttctttaacaagaacacccttgaggtccctgaagtttgccccctaaaaag |
1338459 |
T |
|
| Q |
105 |
gcaagcaagcacaattaaaatttacatagagcaacaaagataaaataatagtactacataatatcaattcaagatacggtaccttcttctttggaatgtg |
204 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||| ||||| |||||||||||| |||||| || ||||||| |||||||||||| |
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|
| T |
1338460 |
gcaagcaagcacaattagaatttacatggagcaacaaagataaaataacagtac---ataatatcaattaaagatagggaaccttctcctttggaatgtg |
1338556 |
T |
|
| Q |
205 |
gcaaactctctcatagtcatcggtatttaatttcaaaggcctgtgatcatacagcataccacttggtgcactatgatagtcagcagaataattcgccatc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||| ||||| |
|
|
| T |
1338557 |
gcaaactctctcatagtcatcggtatttaatttcaaaggcctatgatcatacagcataccacttggtgcactttgagagtcagccaaataattcaccatc |
1338656 |
T |
|
| Q |
305 |
tctggagtagaaaacacaagattcaacaccagttcagtttactgatgaaggaagcaagacagattttctaaccatatgacatgtaacaacatgcaatgac |
404 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||| ||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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|
| T |
1338657 |
tctggagtagaaaacataagattcaaaaccagttcaggttaatgatgaaggaagcaagacaaattttctaaccacgtgacatgtaacaacatgcaatgac |
1338756 |
T |
|
| Q |
405 |
cacatacacaattctagttataaaaaagaccagagtgagacaaaatgcagttcatatatatgcagccagtacattttagctgataaatagagattgtgtg |
504 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
1338757 |
cacatacacaatcctagttataaaaaagaccagagtaagacaaa---------------atgcggccagtacattttagctgataaatagagattgtatg |
1338841 |
T |
|
| Q |
505 |
aatcttactctaggtaagcttgatatttagcatgaacacattgaaatataaaacattcattcat-aaaaaactgctgacatctttcattgcaatgaca |
601 |
Q |
| |
|
|||||||||||| || ||||||||||||| | ||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
1338842 |
aatcttactctaagtgagcttgatatttaatttaaacacattgaaatatgaaacattcattcataaaaaaaccgctgacatctttcattgcaatgaca |
1338939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 5 - 322
Target Start/End: Original strand, 5640246 - 5640563
Alignment:
| Q |
5 |
ccagattttagatgcactctttcaacagaggggtcccattccaccnnnnnnnctttaacaagcactcccttgaggtccctgaagtttgccccctaaaag- |
103 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| ||||| |||| |||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
5640246 |
ccagatttcagatacactctttcaacagaggggtcccactccacttttttttctttcacaagcacaccctttaggtccctgaagtttgccccctaaaaaa |
5640345 |
T |
|
| Q |
104 |
ggcaagcaagcacaattaaaatttacatagagcaacaaagataaaataatagtactacataatatcaattcaagatacggtaccttcttctttggaatgt |
203 |
Q |
| |
|
|||||| | |||||||||||||||||| |||||||||||||||||||| || || |||||||||||||||||| || ||||||||||| |||||| |
|
|
| T |
5640346 |
ggcaagaatgcacaattaaaatttacagggagcaacaaagataaaataacagaac---ataatatcaattcaagatcaggaaccttcttcttcggaatga |
5640442 |
T |
|
| Q |
204 |
ggcaaactctctcatagtcatcggtatttaatttcaaaggcctgtgatcatacagcataccacttggtgcactatgatagtcagcagaataattcgccat |
303 |
Q |
| |
|
||||||||||||||||||||||| ||||||| | ||||||||||||||||||| ||||||||||||||| | | ||||||| | |||||| |||| |
|
|
| T |
5640443 |
ggcaaactctctcatagtcatcgttatttaacagatatggcctgtgatcatacagcagaccacttggtgcactttcagagtcagctgtgtaattcaccat |
5640542 |
T |
|
| Q |
304 |
ctctggag--tagaaaacaca |
322 |
Q |
| |
|
|||| ||| ||||||||||| |
|
|
| T |
5640543 |
ctctagagaatagaaaacaca |
5640563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 623
Target Start/End: Original strand, 5640706 - 5640793
Alignment:
| Q |
536 |
atgaacacattgaaatataaaacattcattcat-aaaaaactgctgacatctttcattgcaatgacaacagagtactaaaaaagcaaac |
623 |
Q |
| |
|
|||||||| ||||||||| || ||||| ||||| ||||||| | ||||||||||| ||||| ||||||| | ||||||||| |||||| |
|
|
| T |
5640706 |
atgaacactttgaaatatgaaccattcgttcataaaaaaacaacagacatctttca-tgcaaagacaacaaattactaaaaaggcaaac |
5640793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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